Ehis024981.2
Basic Information
- Insect
- Eustalomyia histrio
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949748255.1
- Location
- OX456525.1:11704414-11720297[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2 5.1e+04 -6.1 5.7 67 67 90 90 42 153 0.53 2 4 0.4 1e+04 -3.1 2.4 28 55 94 121 86 180 0.45 3 4 1.9e-117 4.9e-113 378.8 27.4 1 299 192 489 192 490 0.95 4 4 0.088 2.2e+03 -0.9 4.1 214 246 513 544 492 564 0.52
Sequence Information
- Coding Sequence
- ATGGATACTTCAAGTGCCGTTGGACGGCGTCGGGTTAATTCACGTGTTAATGCAGAAGATCAAGCATTGGATCAAATTGCTAAAGAGGAGGCCAAAGAGGAAGGTGGATTGCAACTGCAAAATATTGTCAATGATaatgaacaacaacaaaaacaacaggtGGGAGAAATATTAACAACAACTGATATCAATGATAAAAACGAAGAACAAAACGAAATAACAACAATGCCAACTACTTCTTCAATTAGCGGCGGAAATgaagataataatgaaaatgataaaaatcaaCATCAACAAACAGATAAAAATGTATCTACAAATGAAGAAATCACCGATAGCGGGAGCAATACAGACATTATAAATGCCCATTTACCGGGATCCGATGAAAATGATAAATCATATTCTGCAGTTATACAGTCTCAGCAAACAAACAATGCAAATTCTGCTGTTACAACAAATAAAGAAAGTAATTACTATGATGATAATGCTAATGATGACAATGACATGGATGATGAATATGCTGAACCATACGATGAATATTTAGTTCAATTCCTAGATGAAGCAAATCACATTGCTGAAGCTAGATTAGCTGCCAGAAGGCAGGCAAGAGCGGAAGCTCGGGAAATTCGAATGAGAGAATTGGAACGACAGCAAAAGGAACAAGAATCGAATGCTGATCGAGTATTTGATATGCACACAACTGCAACTGGCATAACTCCATTGTCACACATGCGACTGGGTATTGGCAGTTCACCCACAGTTAGTGGTTTACTAAACTCCACACGTGCCAGTTCGATGTCTTCACGACGCAGTAGTGAAGATTCACTGGAGGAGGAAGGCCGCAGCTTAAGGGATATACGTCATGAATTAAAGGATGTAGAAGAACGGTTTCGTAAGGCCATGATTGCAAACGCCCAATTGGATAACGATCGTGCCTCACAAACGTATCAAATTCAATTGCTTAAAGATAAGCTAGAAGATATGGAAGAATCATTTTCACAATTACAGCGTGAATGCAAGGAAAAAACACGTGATTGTAATGCGTTGAAACGTTCGTTGGACAAATTAAGTGAAGAGCTTAAATTGGTTCAGGGTCAGCTCAATGAGCGTGACACACTTATAGCAGAACAGGGTTTAGTTATTGTGGCAGTTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCAGTGTGGAAAATGCACAATTATTGGGTTCGGTACAAGGATCATTAGatGTTCGACTTAAGAAATTTAGTGAAGAGAAACAGCAATTGCAAGCCGAAGTCCAACATTTGCAGGAACAATTAGAAACATATAAAAGTCAAGGCAAAGGACGAGGAAAAGGCAATTCATCAAATGGTCCTTTAGGTTCAGACGATGATGATTATGAAGCTCaaagaGAAGCTAACAAAATCATATcggattataaatataaattacaaaaatctgaACAAGAAATTGCTAGTCTTCAATCGAGCTTAGCACGTTCAGAAACGCAAGTTATACGTTATAAAAGTACAGCAGAGGCTGCAGAAAAAGCTGAATCTGAGCTTAAAATTGAAAGAAGGAAATTACAGCGAGAGaatcgCGAGACAATGGAAAAACTCGAGGAATTAGAAACATCAAATAATCATTTACTGAAACGTTTGGACAAATTAAAGAATGCCAAAAGTGCTTTGCTTAAGGATCTTTGA
- Protein Sequence
- MDTSSAVGRRRVNSRVNAEDQALDQIAKEEAKEEGGLQLQNIVNDNEQQQKQQVGEILTTTDINDKNEEQNEITTMPTTSSISGGNEDNNENDKNQHQQTDKNVSTNEEITDSGSNTDIINAHLPGSDENDKSYSAVIQSQQTNNANSAVTTNKESNYYDDNANDDNDMDDEYAEPYDEYLVQFLDEANHIAEARLAARRQARAEAREIRMRELERQQKEQESNADRVFDMHTTATGITPLSHMRLGIGSSPTVSGLLNSTRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESFSQLQRECKEKTRDCNALKRSLDKLSEELKLVQGQLNERDTLIAEQGLVIVAVENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVQHLQEQLETYKSQGKGRGKGNSSNGPLGSDDDDYEAQREANKIISDYKYKLQKSEQEIASLQSSLARSETQVIRYKSTAEAAEKAESELKIERRKLQRENRETMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -