Eaur005798.1
Basic Information
- Insect
- Euspilapteryx auroguttella
- Gene Symbol
- Rfx2
- Assembly
- GCA_951802225.1
- Location
- OX637645.1:3503872-3514407[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.6e-37 9.6e-33 113.1 0.0 3 78 80 155 78 156 0.97 2 12 1.8 2.3e+04 -3.4 0.0 24 33 479 488 467 494 0.70 3 12 0.16 2.1e+03 -0.1 0.0 6 37 508 539 503 545 0.81 4 12 0.048 6.1e+02 1.6 0.0 5 38 554 587 550 593 0.83 5 12 0.039 5e+02 1.9 0.0 5 38 601 634 597 640 0.83 6 12 0.048 6.1e+02 1.6 0.0 5 38 648 681 644 687 0.83 7 12 0.048 6.1e+02 1.6 0.0 5 38 695 728 691 734 0.83 8 12 0.048 6.1e+02 1.6 0.0 5 38 742 775 738 781 0.83 9 12 0.039 5e+02 1.9 0.0 5 38 789 822 785 828 0.83 10 12 0.048 6.1e+02 1.6 0.0 5 38 836 869 832 875 0.83 11 12 0.039 5e+02 1.9 0.0 5 38 883 916 879 922 0.83 12 12 0.048 6.1e+02 1.6 0.0 5 38 930 963 926 969 0.83
Sequence Information
- Coding Sequence
- ATGTCCCTGATGTGGGCCAGGTCGGAGGACTCAGCGCGCGCGAACATGCCCTGGGCAAGGCGCACGATGAACTCGTCCAGGCTCTCCACTCAAAGCGAGACGCTACGCACGTACCCAGTGTACAACGTGACAACGGgggcggaggcggcggcggctggaGGCGAGGCGGCGTGGGAGGCCGTGTACACGCCGCCGGCCGCCgagccgccgcccgcgcccgcgccgcgcatGCCGCCCGCCACCGTCACCTGGCTGCTGGACCACTACGAGACTGCTGACGGCGTGTCATTGCCGCGGTCCACGCTGTACTCGCACTACCTGCGGCACTGCGCCGCGCACCGCCTCGAGCCCGTCAACGCCGCCTCCTTCGGAAAGCTGATCCGCTCGGTGTTTGTCGGCTTGCGCACGCGCCGGCTCGGAACTAGAGGCAACTCGAAGTATCACTACTACGGCATACGAGCTAAACCGAGCGCGGAGTGCTCGCCGCCCAGGCAAGACAAGGATATTGAAACACAGGAGGACCGGTCGAGCGACAGCATGGAGCAGGGCGGCGACAGCCCGGAGTGCAGCTCGGCGCACCGGCAGTACCTGGGCTCGGTGCGCGCgccctcgccgccgccgccgccgccgcccgccgccgaccTGGCCGAGATGGCCGCGCTGCGACGTCTGCACAGGGAGCACGGCGCCGAGTTCCTGGAAGCTGTAGCCTCACTCGACACTTCGGCAGTAGAACGTTGCCGTCGAAAGTTCTGgaagcgcggcggcggcgcggcgctgccCCGGCGCCGGCTGGCCGAgctggcggcgcggcgcgaggTCGCCGCCTGGCTGGGGGAGGCAGAGCTCATGCTGCACCAGCGCGCCGTGGAGCTCCTCCTGCCTGACGTGCTCAAGCCTATACCGCCGCATCTCACTCAGTCGATCCGCAACTTCGCGAAGGGCCTGGAGGCGGCGCTGTCGGCGGGCTCGGCGGaggcgccggcggcggcgcgcggcgcgctggcggcggcgggcggcgcgctggcggcggcgctgcGCCGGTACACCTCGCTCAACCACCTCGCGCAGGCCGCGCGCGCCGTGCTCGCCAACAAGCACCAGATACATCAGATGCTGGCGGACCTGAACCGCGTGGATTTCCGCGTGGTGCGCGAGCAGGCGGCCTGGGCCTGCTCCAGCggcagcgccgccgccgcgcaccgCCTCGAGGCCGACTTCAAGGCAACTCTAGGCCGCGGTGCGACACTGGAGCAATGGGCGGCCTGGCTCGAGCAGTGCGTCAAGAACGCCCTGGCCGCCCACGAGAACAAACCCGACTACAGTGCTAGGGCGAGGCGACTTTTGCTCGACTGGTCTTTTTACTCTTCGCTCGTGATTCGTGAACTTACTCTAAGGTCGGCGGCGTCGTTCGGCTCGTTCCACCTGATCCGTCTGCTGTACGACGAGTACGTCTCGTACGTGATAGAGCGGCGAGTGGCCGCGCACGAGCAGCGGCCGCCCATCGCCGTCGTGCACCGCGCGCTGCTGGCCGCGCGGGTGAGTGTagacacacacgcacacattgACACTCTTCTGCTGTACGACGAGTACGTCTCGTACGTGATAGAGCGGCGAGTGGCCGCGCACGAGCAGCGGCCGCCCATCGCCGTCGTGCACCGCGCGCTGCTGGCCGCGCGGGTGAGTGTagacacacacgcacacattgACACTCGTCTGCTGTACGACGAGTACGTCTCGTACGTGATAGAGCGGCGAGTGGCCGCGCACGAGCAGCGGCCGCCCATCGCCGTCGTGCACCGCGCGCTGCTGGCCGCGCGGGTGAGTGTagacacacacgcacacattgACACTCGTCTGCTGTACGACGAGTACGTCTCGCACGTGATAGAGCGGCGAGTGGCCGCGCACGAGCAGCGGCCGCCCATCGCCGTCGTGCACCGCGCGCTGCTGGCCGCGCGGGTGAGTGTagacacacacgcacacattgACACTCGTCTGCTGTACGACGAGTACGTCTCGTACGTGATAGAGCGGCGAGTGGCCGCGCACGAGCAGCGGCCGCCCATCGCCGTCGTGCACCGCGCGCTGCTGGCCGCGCGGGTGAGTGTagacacacacgcacacattgACACTCGTCTGCTGTACGACGAGTACGTCTCGTACGTGATAGAGCGGCGAGTGGCCGCGCACGAGCAGCGGCCGCCCATCGCCGTCGTGCACCGCGCGCTGCTGGCCGCGCGGGTGAGTGTagacacacacgcacacattgACACTCGTCTGCTGTACGACGAGTACGTCTCGTACGTGATAGAGCGGCGAGTGGCCGCGCACGAGCAGCGGCCGCCCATCGCCGTCGTGCACCGCGCGCTGCTGGCCGCGCGGGTGAGTGTagacacacacgcacacattgACACTCGTCTGCTGTACGACGAGTACGTCTCGCACGTGATAGAGCGGCGAGTGGCCGCGCACGAGCAGCGGCCGCCCATCGCCGTCGTGCACCGCGCGCTGCTGGCCGCGCGGGTGAGTGTagacacacacgcacacattgACACTCGTCTGCTGTACGACGAGTACGTCTCGTACGTGATAGAGCGGCGAGTGGCCGCGCACGAGCAGCGGCCGCCCATCGCCGTCGTGCACCGCGCGCTGCTGGCCGCGCGGGTGAGTGTagacacacacgcacacattgACACTCGTCTGCTGTACGACGAGTACGTCTCGCACGTGATAGAGCGGCGAGTGGCCGCGCACGAGCAGCGGCCGCCCATCGCCGTCGTGCACCGCGCGCTGCTGGCCGCGCGGGTGAGTGTagacacacacgcacacattgACACTCGTCTGCTGTACGACGAGTACGTCTCGTACGTGATAGAGCGGCGAGTGGCCGCGCACGAGCAGCGGCCGCCCATCGCCGTCGTGCACCGCGCGCTGCTGGCCGCGCGGGAGGAAGAACAAGCCATAGAAGGGAAGACAACGGAAGATAATACAGAAGAGCAACAAGAAGAGGTTATCCAGGAGACCGTGATCAGTGAAGTTGTCGATGAAGACGACCCGGCCTGGGAGtgggctgatgatgatgaagatgagGAGATCGACTCCAAACGTTGCAAGCTGGAGAAACTTTAA
- Protein Sequence
- MSLMWARSEDSARANMPWARRTMNSSRLSTQSETLRTYPVYNVTTGAEAAAAGGEAAWEAVYTPPAAEPPPAPAPRMPPATVTWLLDHYETADGVSLPRSTLYSHYLRHCAAHRLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPSAECSPPRQDKDIETQEDRSSDSMEQGGDSPECSSAHRQYLGSVRAPSPPPPPPPAADLAEMAALRRLHREHGAEFLEAVASLDTSAVERCRRKFWKRGGGAALPRRRLAELAARREVAAWLGEAELMLHQRAVELLLPDVLKPIPPHLTQSIRNFAKGLEAALSAGSAEAPAAARGALAAAGGALAAALRRYTSLNHLAQAARAVLANKHQIHQMLADLNRVDFRVVREQAAWACSSGSAAAAHRLEADFKATLGRGATLEQWAAWLEQCVKNALAAHENKPDYSARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYVIERRVAAHEQRPPIAVVHRALLAARVSVDTHAHIDTLLLYDEYVSYVIERRVAAHEQRPPIAVVHRALLAARVSVDTHAHIDTRLLYDEYVSYVIERRVAAHEQRPPIAVVHRALLAARVSVDTHAHIDTRLLYDEYVSHVIERRVAAHEQRPPIAVVHRALLAARVSVDTHAHIDTRLLYDEYVSYVIERRVAAHEQRPPIAVVHRALLAARVSVDTHAHIDTRLLYDEYVSYVIERRVAAHEQRPPIAVVHRALLAARVSVDTHAHIDTRLLYDEYVSYVIERRVAAHEQRPPIAVVHRALLAARVSVDTHAHIDTRLLYDEYVSHVIERRVAAHEQRPPIAVVHRALLAARVSVDTHAHIDTRLLYDEYVSYVIERRVAAHEQRPPIAVVHRALLAARVSVDTHAHIDTRLLYDEYVSHVIERRVAAHEQRPPIAVVHRALLAARVSVDTHAHIDTRLLYDEYVSYVIERRVAAHEQRPPIAVVHRALLAAREEEQAIEGKTTEDNTEEQQEEVIQETVISEVVDEDDPAWEWADDDEDEEIDSKRCKLEKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -