Eher094099.1
Basic Information
- Insect
- Euschistus heros
- Gene Symbol
- -
- Assembly
- GCA_003667255.1
- Location
- RCWM01000477.1:21360-24469[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00066 28 7.7 0.5 21 50 24 53 15 56 0.89 2 11 0.0031 1.3e+02 5.5 0.2 17 49 65 97 59 103 0.84 3 11 0.091 3.9e+03 0.8 0.3 23 52 111 141 108 141 0.80 4 11 0.00026 11 8.9 0.7 18 51 135 168 129 170 0.90 5 11 0.00044 19 8.2 0.5 19 52 165 199 163 199 0.87 6 11 0.00012 5 10.0 0.5 17 52 192 228 191 228 0.89 7 11 9.9e-05 4.2 10.3 0.5 17 52 221 257 220 258 0.89 8 11 0.0032 1.4e+02 5.5 1.0 21 48 254 281 251 283 0.89 9 11 1.6e-05 0.68 12.8 1.2 18 52 280 315 278 316 0.89 10 11 3.9e-05 1.7 11.6 0.5 22 49 313 340 311 345 0.91 11 11 0.014 6e+02 3.4 0.4 19 47 339 367 338 370 0.79
Sequence Information
- Coding Sequence
- ATGTCCTCAATGGACTATAAAGCAACACAAAATAGTGCTTTAAAAAGTCACATAAAGGCCCACCATACATTTGAGAAGCCTTACCAATGTCCTCAATGTGACTATAAAGCAACAGTAAATAGAGCTTTAAAACATCACATAATGGCCCGccatactgCAACACAAAATAGTGCTTTAAAAAGTCACATAAAGGCCCGCCATACATTTGAGAAGCCTTACCAATGTCCTCAATGTGACTATAAAGCAACAGAAAATAGTGCTTTAAAAAGTCACATAATGGCCCGccatactggtgagaagcctcatcaatgccTCACTGTGACTTTAAAACAGTTGTGTTGCTGTCCTCAATGTGACTATAAAGCAACAGGAAATAGTGCTTTAAAAAGTCACATAATGGCCCGCCATACATTTGAGAAGCCTTACCAATGTCCTCAATGTGACTATAAAGCAACAGAAAATAGAGCTTTAAAACATCACATAATAGCCCGccatactgGTAaaaagcctcatcaatgtcctcaatGTGACTATAAAGCAACACAAAATAGTGCTTTAAAAAGTCACATAAAGGCCCGCCATACTTTTGAGAAGCCTTACCAATGTCCTCAATGTGACTATAAAGCAACACAAAATAGTGCTTTAAAAAGTCACATAAAGGCCCGCCATACTTTTGAGAAGCCTTACCAATGTCCTCAATGTGACTATAAAGCAACACAAAATAGTGCTTTAAAAAGTCACATAAAGGCCCGCCATACATTTGAGAAGCCTTACCAATGTCCTCAATGTGACTATAAAGCAACAGTAAATAGAGCTTTAAAACATCACATAATGGCCCGccatactggtgagaagcctcatcaatgccCTCACTGTGACTTCAAAACAGTTGTGTTGCGTAATTTAAAAAACCATATAAGGGTCCGCCATACATTTGAGAAACCTTACCAATGTCCTCAATGTGACTATAAAGCTACAGAAAATAGAGCTTTAAAAAGGCACATAATGGTCCGCCATACAGGTGAAAAACCTCATCAATGCCCTCACTGTGTCTTTAAAGCAGTTGATTTGTCTactttaaaaagacatataatggCCAGCCATACAGAGCTTGTTGAAGGTACAGTGGTTTCAGTAGATGGGGCCTCATTCGGGTTACTAGGTGTTCCTTCTGGCTGGCAGTGTTCTGACACTGGGTTTGCTTGGGCAGGATTGGAGCATTAA
- Protein Sequence
- MSSMDYKATQNSALKSHIKAHHTFEKPYQCPQCDYKATVNRALKHHIMARHTATQNSALKSHIKARHTFEKPYQCPQCDYKATENSALKSHIMARHTGEKPHQCLTVTLKQLCCCPQCDYKATGNSALKSHIMARHTFEKPYQCPQCDYKATENRALKHHIIARHTGKKPHQCPQCDYKATQNSALKSHIKARHTFEKPYQCPQCDYKATQNSALKSHIKARHTFEKPYQCPQCDYKATQNSALKSHIKARHTFEKPYQCPQCDYKATVNRALKHHIMARHTGEKPHQCPHCDFKTVVLRNLKNHIRVRHTFEKPYQCPQCDYKATENRALKRHIMVRHTGEKPHQCPHCVFKAVDLSTLKRHIMASHTELVEGTVVSVDGASFGLLGVPSGWQCSDTGFAWAGLEH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00715301;
- 90% Identity
- iTF_00715301;
- 80% Identity
- iTF_00715301;