Ecal005223.1
Basic Information
- Insect
- Eurytoma californica
- Gene Symbol
- -
- Assembly
- GCA_035586675.1
- Location
- JAXIUT010000021.1:18514855-18516385[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00039 0.05 15.1 0.1 1 20 93 112 93 114 0.93 2 10 0.0025 0.33 12.6 0.3 1 22 131 152 131 152 0.97 3 10 1.9e-05 0.0024 19.3 0.3 3 23 192 213 190 213 0.93 4 10 0.0097 1.2 10.7 0.2 1 23 217 240 217 240 0.92 5 10 0.00056 0.072 14.6 2.2 2 23 247 268 247 268 0.96 6 10 5.3e-05 0.0068 17.8 0.9 2 23 276 298 275 298 0.94 7 10 0.00026 0.033 15.7 3.2 1 23 308 330 308 330 0.98 8 10 0.016 2 10.1 0.3 2 23 337 357 336 357 0.96 9 10 3.1e-06 0.00039 21.7 0.8 3 23 365 385 364 385 0.97 10 10 2.9e-05 0.0038 18.7 4.9 1 23 391 413 391 414 0.96
Sequence Information
- Coding Sequence
- ATGCCATTAAAATCATGGCAAAAGCGCAAGCGGTCTAAAGTCCCTGTCATCCTGCAGCGCAACCGATGTGCTGCTACACCTGAATTGCGAGAGACGGTCGTACCGGTGATCGACGCTGGTCAGACGTCCATACACACGATTCTGCGAAAGGACGTGATCTTGGTGAAAACACTCAACTACGACAGAGAATTCATTGCAGTTGAGGACTATGAGGAAGAGCAAACCGATAAAGAACCGGCGGATATTGACTTGAGCCAAGACGAGCCTCAAAACGAGTTCGACTGTGACTCGTGTGGCGAGTCGTTCGATAACCGTTCCTCTCTAATAATCCACAAAACGGAGAGATCGATCATGCGCACGCGAGAGGCTCTACGCGAACCAGAGCTCAGGTACGAGTGCGACCTGTGCAAACGGTTGTTCTCGCTCAAGGGCTCCCTCGCGCTCCACTATCGGACCTGCAGCTCGTCCAACGACGCGGAAGAGCGGCCTCCGATCCGCCGGCGCCGCTGCACCAAAAGGCCCGCGCAAGAGCACGGCGCCAGCGGCACCACCCTCACCGAGGCTCCCGTCAACTGCGGCGAGTGCGGCAAGGTCTTCAAGAAGCTGAAGTACCTGAAGGCGCACCAGACGCTGGCGCACGCGGAGGAGCATGCATGCCTCCTATGCGACGAGCGCTTCGACGCCGCGGGCAAGCTGAGGCAGCACATGGCCGAGCGCCACTCCGGCGACTACTCCGAGGTCTGCGAGATCTGCCACAAGGGCTTCCACTCGCGCCAGTCGCTCAAGGTGCACGTGGCGTCGCACGCCCGCGACTCCCAGACCTGGGAGTGCGAGCTCTGCCCCAAGCGATTCCGCCACGAGGTCTACCTGCGCAAGCACGTGCAGCAAGTGCACGTCGAGGGCCAGGACCGCAAGGCGACGTTCACCTGCGAGACCTGCGGCTACTCCACCACCTACAAGAACTCCTTCCGCGAGCACATGTACAAGCACACGGGCGAGGACGTCGTCGAGTGCGAGGTGTGCGGCAAGCGCATGCGCAAGGCGTACTTCAGGATACACACGCGGATACACACCGGGGAGAAACCGGAGATCTGCGAGTACTGCGGCAAGAGCTTCACCGCGAGGAAGTACCTCACCAAGCACCAAGTCACGCACACCGGCGAGAAGCCCTACCAGTGCAAGCTTTGCGGCCGGAAGTACACGCAGCGCGGCACACTCACGCTGCACTTTCGGAAGCACCACCCGACGGAGGCCAAGAGCGGCAAGTGTCCGATCACGGGCAAGAAAAAAGGCGAGCAGGTCGACGTTGACGCGACCTCGAGTCTGGTCGCTGAAGCCTGCGTTAAAAATGTGCATGACGATGCTGTTAGCGATGATACTACGGGCGACCCGCTTGAAAGTAATTTCGAAATAGTCGAAGAGGATCTTGTTGATGAAACCTTTCACGTCAATTATGCAGAAACCGTGGAATCTTCGTAA
- Protein Sequence
- MPLKSWQKRKRSKVPVILQRNRCAATPELRETVVPVIDAGQTSIHTILRKDVILVKTLNYDREFIAVEDYEEEQTDKEPADIDLSQDEPQNEFDCDSCGESFDNRSSLIIHKTERSIMRTREALREPELRYECDLCKRLFSLKGSLALHYRTCSSSNDAEERPPIRRRRCTKRPAQEHGASGTTLTEAPVNCGECGKVFKKLKYLKAHQTLAHAEEHACLLCDERFDAAGKLRQHMAERHSGDYSEVCEICHKGFHSRQSLKVHVASHARDSQTWECELCPKRFRHEVYLRKHVQQVHVEGQDRKATFTCETCGYSTTYKNSFREHMYKHTGEDVVECEVCGKRMRKAYFRIHTRIHTGEKPEICEYCGKSFTARKYLTKHQVTHTGEKPYQCKLCGRKYTQRGTLTLHFRKHHPTEAKSGKCPITGKKKGEQVDVDATSSLVAEACVKNVHDDAVSDDTTGDPLESNFEIVEEDLVDETFHVNYAETVESS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00713845; iTF_00713143;
- 90% Identity
- -
- 80% Identity
- -