Ebru025114.1
Basic Information
- Insect
- Eurytoma brunniventris
- Gene Symbol
- -
- Assembly
- GCA_900475205.1
- Location
- UXGB01000222.1:63483-65033[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00035 0.041 15.1 0.1 1 20 106 125 106 127 0.93 2 10 3e-05 0.0035 18.4 0.4 1 22 144 165 144 165 0.97 3 10 0.00055 0.064 14.4 0.3 2 23 204 226 203 226 0.94 4 10 0.0097 1.1 10.5 0.4 1 23 230 253 230 253 0.92 5 10 0.0016 0.18 13.0 2.1 2 23 260 281 260 281 0.95 6 10 0.00046 0.054 14.7 0.9 2 23 289 311 288 311 0.94 7 10 0.00023 0.027 15.6 3.2 1 23 321 343 321 343 0.98 8 10 0.014 1.6 10.0 0.3 2 23 350 370 349 370 0.96 9 10 2.7e-06 0.00032 21.7 0.8 3 23 378 398 377 398 0.97 10 10 2.6e-05 0.0031 18.6 4.9 1 23 404 426 404 427 0.96
Sequence Information
- Coding Sequence
- ATGGTAAAGCCTGCTGAGTCGAATCCGACTAATTCCAGTCTCGTTGTCTATTTCAGGCAAAAGCGCAAGCGGTCTAAAGTCCCTGTCATCCTGCAGCGCAACCGACGTGCTGCTACACCTGAATTGCAAGAAACAATCGTGCCAGTGATCGATGCCGGTCAGACCTCCATACACACGATTCTGCGAAAGGACGTGATCTTGGTGAAATCGTTCAACTACGACAGAGAATTCATCAAAGTTGAGGACGATGCGGAAGCGAGCAGTGAAGAAGAACTGCCAGAAATTGAATCGAGCCAAGACGAGCTTCAAAACGCGTTCGACTGCGACTCGTGCGGCGAGTCGTTCGACAACCGCTCCTCTCTGATCATTCACAAGACGGAGAAGTCCATCATGCGCACGCGGGACGCGCTTCGCGAACCGGAGCTCGGCTACGAGTGCGACCTGTGCAAGCGGCGGTTCGCGCGCAagggctcgctcgcgctccacTATCGGACCTGCAGCTCGTCCAACGACGCGGAGGAACGACCCCCGGTCCGCCGGCGCCGCTGCAACAAAACAGCCGCGCACGAGCACGGCGCCAGCGGCACCACCCTCACCGAGGCTCCCGTCACCTGCGACGCCTGCGGCAAGCTCTTCAAGAAGCTCAAGTACCTGAAGGCGCACCAGATGCTGGCGCACGCGGAGGAGCACGCCTGCCTCCTGTGCGACGAGCGCTTCGACGCCGCGGGCAAGCTGCGCCAGCACATGACCGAGCGGCACTCCGGCGACTACTCCGAGGTCTGCGAGGTCTGCCACAAGGGCTTCCACTCGCGCCAGTCGCTCAAGGTGCACGCGGCCTCGCACGCCCGCGACTCCCAGACCTGGGAGTGCGAGCTCTGCGCCAAGCGATTCCGCCACGAGGTGTACCTGCGCAAGCACGTGCAGCAGGTGCACGTCGAGGGCCAGGCCCGCAAGGCGAGCTTCACCTGCGAGACCTGCGGCTACTCCACCACCTACAAGAACTCCTTCCGCGAGCACATGTACAAGCACACGGGCGAGGACGTCGTCGAGTGCGAGGTGTGCGGCAAGCGCATGCGCAAGGCCTACTTCAGGATACACACGCGAATACACACCGGGGAGAAACCCGAGATCTGCGAGTACTGCGGCAAGAGCTTCACCGCGAGGAAGTACCTCACCAAGCACCAAGTCACGCACACGGGCGAGAAGCCCTACCAGTGCAAGCTGTGCGGCCGGAAGTACACGCAGAGGGGTACGCTCACGCTGCACTTTCGGAAGCACCATCCGACGGAGGCCAAGAGCGGCAAGTGTCCGATCACGGGCAAGAAAAAGGGCGAGCAGCTCGACGTCGAGGCGAACTCGAGGCTGGCCGCTGAAGAGTGCGCGAAGGATGGGCAGGTGAAGGATGAAGTTGGGATTGGCGAAGAGACTGCGCGCGTTGACGCAGCTGACGAAATTGACAATCCGATTGAAAGTAAATTCGAAATAGTCGAAGAGGATCTTGTTGACGAAACCTTTCATGTCAATTATGAAGAAACCGTGGAGTCTTCGTAA
- Protein Sequence
- MVKPAESNPTNSSLVVYFRQKRKRSKVPVILQRNRRAATPELQETIVPVIDAGQTSIHTILRKDVILVKSFNYDREFIKVEDDAEASSEEELPEIESSQDELQNAFDCDSCGESFDNRSSLIIHKTEKSIMRTRDALREPELGYECDLCKRRFARKGSLALHYRTCSSSNDAEERPPVRRRRCNKTAAHEHGASGTTLTEAPVTCDACGKLFKKLKYLKAHQMLAHAEEHACLLCDERFDAAGKLRQHMTERHSGDYSEVCEVCHKGFHSRQSLKVHAASHARDSQTWECELCAKRFRHEVYLRKHVQQVHVEGQARKASFTCETCGYSTTYKNSFREHMYKHTGEDVVECEVCGKRMRKAYFRIHTRIHTGEKPEICEYCGKSFTARKYLTKHQVTHTGEKPYQCKLCGRKYTQRGTLTLHFRKHHPTEAKSGKCPITGKKKGEQLDVEANSRLAAEECAKDGQVKDEVGIGEETARVDAADEIDNPIESKFEIVEEDLVDETFHVNYEETVESS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00714606;
- 90% Identity
- iTF_00713143;
- 80% Identity
- -