Ecal003161.1
Basic Information
- Insect
- Eurytoma californica
- Gene Symbol
- -
- Assembly
- GCA_035586675.1
- Location
- JAXIUT010000009.1:19928381-19929367[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-09 7.7e-06 26.6 0.0 2 42 16 56 15 59 0.87 2 2 8.3e-10 1.6e-06 28.8 0.0 1 42 164 205 164 208 0.90
Sequence Information
- Coding Sequence
- ATGTCAAAGAATTATGTGAGAAAAACAGACCGAGGTAAATGGTCACAAGAGAGCTTAACTTTAGCTATAAAGGCTGTGAAAGAAGgtttgtgtaataaaaaatctgctAGTACAAAATATGGGATACCTCGTACAACTTTGGCACGTCATTTAAAATTAGGTATTGATGAGAAGAAACGACAAGGGAGAATTCCAATTTTGAGCAAATGCGAAAAAGAATTGGAAGAATTCCTCTTAAACTTACAAAGTCAAGGAATAATATGGACTTTAGCTGAATTACgaagattaattttagaatttgtaCAACAGCACAATGTGAAATTTGGTCGACATcatgtgaaaaaattagttagtAACAAGTGGATCAATACATTTATCTGTAACCATCcgaatttaaatatagaaaaaagtaacaaaggtattattgttgaaaatgaaataaagtccAAAGTCCAACATCATGTACAAAATGCAGATCGATGCCAATGGACTGAGAAGCAATTAATTCAAGCTATCGATTCTGTAAATAGTGGTATTTGCAGTCACAGGGCTGCGAGTAAAATGTTTGGAATACCTAGGACTACATTAATAAGGCACATTAAAGAAGgtaccaaagaaaaaaaacgtttggGTCGTATGCCAATTTTTGGAGAACTTGAAAAAGATTTGACAGAAATTCTACTTAAAGAGCAAAGTTTAAGGAATAGTTTGTCTATGACAGAACTTAGGAGAATAGCatttaattttgcagaaaCTCATCATATTAAACAtaagtttaacaaaaataaaggtttAGCAAGTTATGAGTGGGTTCACGCATTTACAAACAGACATCCTGAAATAACTGTGCAAAAGAATAATTCTTCATCCAAAGTTTACGAATTAAGTTATTCATGTGAATTTAGTGATatgttacaaataattttagaagaaGGAGATGCTTTTGATTTGAACAGTGTTTATATGAGCGATAATTGTGAtccataa
- Protein Sequence
- MSKNYVRKTDRGKWSQESLTLAIKAVKEGLCNKKSASTKYGIPRTTLARHLKLGIDEKKRQGRIPILSKCEKELEEFLLNLQSQGIIWTLAELRRLILEFVQQHNVKFGRHHVKKLVSNKWINTFICNHPNLNIEKSNKGIIVENEIKSKVQHHVQNADRCQWTEKQLIQAIDSVNSGICSHRAASKMFGIPRTTLIRHIKEGTKEKKRLGRMPIFGELEKDLTEILLKEQSLRNSLSMTELRRIAFNFAETHHIKHKFNKNKGLASYEWVHAFTNRHPEITVQKNNSSSKVYELSYSCEFSDMLQIILEEGDAFDLNSVYMSDNCDP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00712762;
- 90% Identity
- iTF_00712762;
- 80% Identity
- -