Ebru025111.1
Basic Information
- Insect
- Eurytoma brunniventris
- Gene Symbol
- -
- Assembly
- GCA_900475205.1
- Location
- UXGB01000222.1:73999-78883[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.6 4.2e+02 2.4 3.6 1 20 170 188 170 193 0.89 2 14 0.024 2.8 9.3 1.0 1 23 196 218 196 218 0.96 3 14 0.0045 0.53 11.6 0.6 1 23 226 248 226 248 0.98 4 14 0.46 54 5.2 1.7 1 23 779 802 779 802 0.97 5 14 0.00056 0.065 14.4 0.4 2 23 805 826 804 826 0.97 6 14 0.27 32 5.9 0.8 1 23 833 856 833 856 0.95 7 14 0.00076 0.089 14.0 0.4 1 23 860 883 860 883 0.94 8 14 0.0023 0.27 12.5 0.1 1 23 887 910 887 910 0.92 9 14 0.0063 0.73 11.1 4.3 1 23 914 937 914 937 0.96 10 14 0.00022 0.026 15.7 3.1 1 23 941 964 941 964 0.97 11 14 0.00012 0.014 16.5 0.7 1 23 971 993 971 993 0.98 12 14 0.00077 0.091 14.0 2.3 1 23 997 1019 997 1019 0.98 13 14 0.00013 0.015 16.4 0.2 1 23 1027 1049 1027 1049 0.98 14 14 0.0011 0.13 13.5 1.6 1 23 1055 1077 1055 1078 0.96
Sequence Information
- Coding Sequence
- ATGGAGATGTTGAGAGTGAGAATGAAAGTGTTGTTTAGGTACGAAGAGGACAGCAAGCTAAGCGTCCAAAGTATCATTGCAAGCTGCACGAGCGACATTAAGATCGCGAACGTCTTCACGTACCAGCAGGAGCTCGTGAAAAGCGAGCCCGAGGAGAGTTCGAAAACATTGCCCAAGTTCTACACAATCTACCTCAACCCACACAACGGCAACAGCTATTCGAATTTAAAGAAGAGAAATCCCTTCCACGGGATGAAGAGGAGGCGCACGAGAAGGTGCCGAGACCCTCTGCGCCTGGGCGACAAGGAGAACACAGCGGTGCCACCGGTGAGGGTAAAGCAGGAGTTCGACGAGCCTCTGCCGGCCTTGTTCTGCGAGATGCCGACCGAGGACTTCACCTGGCAGCCGCTGAACAAAATCAAGCGCGAAAAAGACTCGCGCTCGCGTCGGAAAAACACTCGCAGCGGTGTCTGCGCGAAATCGCGGCTGCGCCGGCTCACGTTCTGGTACCCGTGCGGCGAGTGCCAGTGCATGTTCCAGTGCGGTCAGCTGCTCGTTCACCACGTGATCAAAGACCACCCGTACTATTACTGCGGCAAGTGCAGCGAGTTCGTGAAGAATCGCAACGCGCTGAAGGTTCACTTTCAGGAGCACTTCAGGAACCGAAAGGCGCCCTTCCAGTGCGACGAGTGCAGCATGTCGTACAAACAAATTCTGTCTCTGGTAAATCACAAAGAGACGCACACGAACTACAAACTACCAGCGAAATTGGTGATGTCGCACAAAGTTAAGCTCGATCCTTACGAAGAGGAGGAGTTGTTTAACGACGCGGCCAGTGTAAATTCGGCACTAGACCTCGATGACGATTACGATCGTTTGGATCAGACATACTATATACGGGGACCCAACCAGAAAATCATAACCGTCAAAATAGAAAGCGATATAGGGTCGAAAGAAAATCCTCCAAAAATACAGCAACCGCTACTTGTAGTGGATACTCTTCAGAAACAACTTGCGCAACAAGCAGATTTGTTGTTGCACAATCAGGGTCATTCGCAGCAGCATATGATAAAGCTGCTGAATCAGTTAATGCTGCTGCAGCAACCGCAGGTACCAGGTCAGCTTATCGTGTTTCCTCTAACGCAACCTCAACCTCAAACGCAAACGCAATCGCAATCTAACAACGCCCAATCTGAACCTGATCCAAAGTCGCAAACGCAAGCTACGCAGCCTCCAGTAGAATGCAATCGTGAAGCACAGAGGCAGGGGTGTACGTCGCAAACTTTGCTTGCTCCTAAAGATAACCCACAGCAGTCATCGCCTACGCAGCTTCTACCTAATCTTGAACCTGTACCAAAACAACAGACAACACCGTCACTACCTCAGCTTTCACCTGATTCCCAACCGCAAGTACAGGTTTATACTGAATCTGAAACCCAGCCGCGACAAAATGTTTTAGAGCAGCCTGCGCCTGAAGTGGAGCCGCGAAGTTTGATCAAAGTTAGACGCCCATCGCGGCAGCAGGTTTTACAGCAACCGCAGGCACCATCACAGGAGCAGAATTTGATGGAAACTGAAATACAAACGCAACCGCGGATTTTGATTGAAGTTAACCATCCATCGGAGCAGCAAGTTTTACAGCAACCGGAGTCACAGTCAAAGAAGCAGAATTCGAAGGAAATTGTAgtacagcagcaacagcagcttTCAAACGAATGCGAAAGTCAACCCCAGAATTCAGTTGAGCCTCATCAGGATTCGCTGGGGCAGCATGTCATCATGATAACTGTACCTCCTTTGCAATCCGACATGGAGTGTTTCTTTGAACCCCAACCGCCGTCGGTCACTAGATCTCATTCTCCATTGCAATCGCAATTGAGTGCATATCCTGAATCTGCACAAAACGATTTGATTTCTCTCAATCAAATTCCTATCGAACAACATTCTGAATTACAATATGCTTTAGAACCTCCGCTCGATCTCGAAGAACAgcaaactttgttttttgaaaacatGCAAGCAATGAATATTGATAGCGCTCAAATGTCAGTAGATTTAGCAACCAATGAATCATTTCAAAAGATAATCCATAGTATACCAGAGGATTTAGAAGACGAATATATTTTACAGGAGCATATTTTACAGGAGTTTAAAGATCTAGAATTTGAAAGGGAACTGTtgcaagaaaatgaagaacagCTGTCAGAGTTACTAATATACCACAACTCTTTCGACGATTCAAGCATCCTTCCAACAATTCCAAACGACGAACACTGCGACAATATGAAATCAATGGGTATAGAGGATATATGCCAAGTGATGGATAATGGCAGCTATCAGTGCAGACTCTGCAAGACCGTACGTTTCAAGCGTCGTAATATAGTCCAACATATTAGAAACGAGCACGAAGTCAGGTGCAAAATCTGCAATGAGAGATTCAGAGGTGTACGTGACTACAAGGCTCACATGGCAAAGCACCGAAGGAATGAAATGGTGTTCGCGTGCGACCAATGCAACGTCGAAACAACAAGTCAACAGCTCTTGGATTACCACCGCAAGCAAAAACACAGCGAAGGATTTATCTGCAGCGTATGCAACATGAGATTCGAGCTAAAGAGTCAGCTTGAGGTCCACCTGTCCTACAACCACAACGAGCAATTCGACTGCGATGTGTGCGGCAAGAATTTCCAGCTGAAGAGCGTGCTTCAGTCTCACCTGATCGACGTTCACCGCGAGAAATTCGTCTGCAACGAGTGCTGCAAGTGCTTCGGGAATAAGGGTGAGCTTAAGAACCACGTGATCAAGTACCACACCGAGACATTCATCTGCAGAATCTGCGAGGAGCCGTGCCGCAGCAAGCGCCACTTGCAAGCTCACTACAGGACGGCGCACCCCACGGTCGGCTTCGGCTACAAGTGCAGCATATGCAAGCGCGTCATGGCGACCTCCGACAGCCTGAGAAAGCACCTGGCGAAGCACAAGCAAAAATTCAAGTGCCCCGACTGCGACAAGGTGATGGGCACCTACTACTGCCTGACCAAGCACCTGGAGAAGCATCGCAGGACGCGCGTTCGCACCTATCCCTGTTCCGAGTGCGACAAGGAGTTCTCCGAGGAAATAATGCTGAAGATGCACTTGCTCAAGCACGCCGGCATAAAGCCCTACCAGTGCAACGTGTGCGGCATGCGCTACTCGCAGAGGACCCCGATGATGAACCACTGGAAACTTCATCACAGCGCCGACGAGACGAAGCCGCCACCGAAAGTCCATCTGAAGCCGCTGTTCAAGAAAGCCGAGGAGAGGATTTCCGAGCGTCGCATGAGAGCCCAGACGaatttatag
- Protein Sequence
- MEMLRVRMKVLFRYEEDSKLSVQSIIASCTSDIKIANVFTYQQELVKSEPEESSKTLPKFYTIYLNPHNGNSYSNLKKRNPFHGMKRRRTRRCRDPLRLGDKENTAVPPVRVKQEFDEPLPALFCEMPTEDFTWQPLNKIKREKDSRSRRKNTRSGVCAKSRLRRLTFWYPCGECQCMFQCGQLLVHHVIKDHPYYYCGKCSEFVKNRNALKVHFQEHFRNRKAPFQCDECSMSYKQILSLVNHKETHTNYKLPAKLVMSHKVKLDPYEEEELFNDAASVNSALDLDDDYDRLDQTYYIRGPNQKIITVKIESDIGSKENPPKIQQPLLVVDTLQKQLAQQADLLLHNQGHSQQHMIKLLNQLMLLQQPQVPGQLIVFPLTQPQPQTQTQSQSNNAQSEPDPKSQTQATQPPVECNREAQRQGCTSQTLLAPKDNPQQSSPTQLLPNLEPVPKQQTTPSLPQLSPDSQPQVQVYTESETQPRQNVLEQPAPEVEPRSLIKVRRPSRQQVLQQPQAPSQEQNLMETEIQTQPRILIEVNHPSEQQVLQQPESQSKKQNSKEIVVQQQQQLSNECESQPQNSVEPHQDSLGQHVIMITVPPLQSDMECFFEPQPPSVTRSHSPLQSQLSAYPESAQNDLISLNQIPIEQHSELQYALEPPLDLEEQQTLFFENMQAMNIDSAQMSVDLATNESFQKIIHSIPEDLEDEYILQEHILQEFKDLEFERELLQENEEQLSELLIYHNSFDDSSILPTIPNDEHCDNMKSMGIEDICQVMDNGSYQCRLCKTVRFKRRNIVQHIRNEHEVRCKICNERFRGVRDYKAHMAKHRRNEMVFACDQCNVETTSQQLLDYHRKQKHSEGFICSVCNMRFELKSQLEVHLSYNHNEQFDCDVCGKNFQLKSVLQSHLIDVHREKFVCNECCKCFGNKGELKNHVIKYHTETFICRICEEPCRSKRHLQAHYRTAHPTVGFGYKCSICKRVMATSDSLRKHLAKHKQKFKCPDCDKVMGTYYCLTKHLEKHRRTRVRTYPCSECDKEFSEEIMLKMHLLKHAGIKPYQCNVCGMRYSQRTPMMNHWKLHHSADETKPPPKVHLKPLFKKAEERISERRMRAQTNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00713165;
- 90% Identity
- -
- 80% Identity
- -