Basic Information

Gene Symbol
ncor1
Assembly
GCA_900475205.1
Location
UXGB01000151.1:39980-51899[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 4.3 7.5e+03 -2.1 0.1 31 39 549 558 546 559 0.80
2 2 1.2e-09 2.1e-06 28.4 0.1 3 43 721 761 720 764 0.96

Sequence Information

Coding Sequence
ATGGGACGTCGCCGTACTCCATGCGAGACCGCCGCCGAGCGCGGGCCCCAGCAGAGCTACGGTTCAAACTCACGTCAAGCGGTGTCGCCGCGGACGGTCGAGGGTAGCGGTGTCGGgggcgtcggcggcggtgcTGCCGCGGCGGGTGGCGGCAGCGCTGGCGGCCCTGGCAGCCTCGTCGTCGGCGCAGGGGCCGCACGCTATCCCCAGCAACAGCCGCAGCCGCAGTACCAGCAGCCCCAGCCGCAGcatcaccagcagcagcagcaccatcACCTCCAGCCGGCGCACCACTTCTACCACTACCCGCTGCACCAGCACCaggtcgccgccgccgccgccacctcATCATCGCCGGGATCCTTGGCGATGAACAGTGGCCCGGCTGGCGGCCCTGGCCAGCCACCAGCGGGACTACAAGCGACCTCCTCGAACACCTCAGCTCGCGATCAGCATACGCAGCAAGGAAGCGACCAGAGCGGCCTGAACATCACGATAATGAATATCACAGTGCCGCCTGTGGTGCCGGTGCCTACGGGCCTGCGCTTCGTCCATCCTGCATACCTGCCGCCGCCCCATCCGCACCCGCCGCCACAATCGGCTGCCTCGGTTGCCTCGTCCAACTCGGCCTCGCCAGTCTCGGCCTCCCCGGGTCCCGCCTCCATCGTGCAGCAGGTCAGCAGGCAGCATCCCCCCTCGGCACCGTCGCCAGCttcgagcgccgccgcggcttaCACCCGCGACGTCTACCGCAATGCCAGTCCAAACataaacgAGAGAGTGGCGATAAGTGTGAGCAGCAGCCCAGTGACTTCGCGGATCGTCGAGATAAGCAACGAGTACGTAATGAGCGGTCGGGGCGACCGGCCGCGGATATCCCTGCTGCCGGCCCCGGCCTCGATAGCTCCAGCAGCCTCGCCGACCGCGCCCACGGATTATCACGCGGCGGCACGCAACAGCCGAGCTCCCGGAGCTCCGGCTGGTATCCTGACGATGCAGCCACAGGACTACCGGCCCAGTCCCGTCGACATGGCACAAATTCAGCAGGATGCACCGCCCTTCAAGAAAATCCGCCTCGGGCAGCCCACCCAGCAACTGCCACCGACGCAGCAGCCGCAGCAAatgcagcagcaacagcagccgCAGTCGATATCGCAGTCTGACTGCCAGAGGCTCTCGAGCGCCCAAGACACGCTTAACAAGCAGAAGCACGTGCAACAGATGCAGCCGCTCAGGATAGACACGAGGCCGTCAGCAGGTGCGTATACGCCACAAACGGAAGCGATCTCACCGACCCTTCCGGAGCCTAATACGCAAGAGGATGCGACATTTAAGAGCACCAAAGACGATCTCCTTATGCAGATCTCCAAGGTGGATCGGGAAATTGCAAAAAGAGAGTCGCAAATCAGTAAACTTCAGAAAAAGCTTAAAGAGCTTGAAGAAGTAGCTAGCAGACCCTTGGATGGCCCAGGCATCAAGCGACCAGTCGAAGAAGCGTCTCAGCAACCTAAGCATCAGTCccttgtacaaaaaatttatgctgAAAATAAGaaaaaagcgGAGGAGGCGCACAGGCTGTTGGAGAAACTAGGCCCCAAGGTGAAACTGCCACTGTATAATCAGCCGTCGGATACGAGTGTGTATCAGGAGAACCGCACGAGGCATCAGTGCATGAAGACACGCCTGGTTGCGAGATTGCGGAAGGAACACACGGAACGGGCTTCGCTACACCGCCAACAGTCACAAACTTACGCGATACTCGTACAGGAATGGCACCGTAAACTGGAAAAGCTGGAGTCGTCGCAGAAACGTAAAACGAAGGAAGCCAAAAATCGCGAGTTCTTCGAAAAGGTCTTCTCTGAGCTGCGCAAGCAGCGAGAGGATAAGGAGCGTTTCAACAGAGTTGGTTCGCGTGTCAAAAGCGATGCAGACCTCGAGGAGGTACTGGATTGTCTGCAAGAACAGGAGGAAGAGTTGTCggccgaaataaaaaatgcgttGAAAGCTCGTCAGATAGAGGACAAGAAGATGCGCTCGTACGCAGTGAtaccgccgctgctgctggaTGCAAAGCAGCGCAAAATCGCATTTCAGAATCGCAACGGTCTGCTGCAACCGGAGGAGCTCGAGGCGTTGCACAGGGAGAGGAAGCTGATAAACGTCTGGAGTCAGACCGAGCACGAGCTCTTCAAGGAGAAGTACCTGCAGCATCCCAAGAACTTCGGAGCGATAGCCCAGTCGTTCGAGCACAAGTCCGTCGCAGACTGCGTGCATCACTACTACCTCACTAAGAAAGCCGAGAATTATAAGCAGCTATTGCGAAAATCGAGGCGTACGCGTAGTTCTCGAAACAATCCTAACAATAAGataaataatagtaactCCACAATCGGACCTATAGATATTTTAACTACCGGAGTGACGACGAGGCTGCAGCGTGAGCAGCAACAGAAGACCCAGGAAAATCCACAAAACAGTTCGGCGGCATCGAGTAGTAATAGTAGCGCGACCACGATAACGTCGAGCTCGTCAGCCTCGTCGTCCTCCGTCAGCGTGACGAGTAGTAGCTCCTCGGTCACGACGACGGCGTCGTCGTCGCAGCCGGCCGCAACCGCCGCCAGCTCGTCGAGTGgcagcggcgccgccgcgagccTGGCATCGGAGTCCGCAACGACGACGGCAACCACGACGACGATCGCCTCGACGATCGCCGCGGCCTCAGCATCCGTCCCGAGTACAGGCgccacgacgacgacgtcgagcGTACTCACGACGACCTCAACGTCGTCGGCCAGCGCCAAAGACGCCCGCGAGGCGAACAAGGAGAACAAGGAGATTAAGACCGAGCACAAGGACTCGATGCTTCTCAAAGATATTAAAGAGGAGTCCCAGTCCAGCTCTGAAACCCTGTCCAGCAGGGAAATTAAggTCGAAGGTAAAGGTGCGCTGTCCTCGTCGTCGAACACGAGTTTAGCCAACGTGAACAACGCGAGTGGTAATATTGAACCGAAGGATAAGAAGAAGAGCGCGGCTGCGACGGGAGGCTCGACCGGCACCAGCAGGTCGAAGGATAAGAAAAAAGACAACCACGCGACGCCCATGGAAACTAGCGACGAGGAGACGCAGGCCATGGACGCGATGGCGCATACGATAATCGCCAACCAGGCGTAA
Protein Sequence
MGRRRTPCETAAERGPQQSYGSNSRQAVSPRTVEGSGVGGVGGGAAAAGGGSAGGPGSLVVGAGAARYPQQQPQPQYQQPQPQHHQQQQHHHLQPAHHFYHYPLHQHQVAAAAATSSSPGSLAMNSGPAGGPGQPPAGLQATSSNTSARDQHTQQGSDQSGLNITIMNITVPPVVPVPTGLRFVHPAYLPPPHPHPPPQSAASVASSNSASPVSASPGPASIVQQVSRQHPPSAPSPASSAAAAYTRDVYRNASPNINERVAISVSSSPVTSRIVEISNEYVMSGRGDRPRISLLPAPASIAPAASPTAPTDYHAAARNSRAPGAPAGILTMQPQDYRPSPVDMAQIQQDAPPFKKIRLGQPTQQLPPTQQPQQMQQQQQPQSISQSDCQRLSSAQDTLNKQKHVQQMQPLRIDTRPSAGAYTPQTEAISPTLPEPNTQEDATFKSTKDDLLMQISKVDREIAKRESQISKLQKKLKELEEVASRPLDGPGIKRPVEEASQQPKHQSLVQKIYAENKKKAEEAHRLLEKLGPKVKLPLYNQPSDTSVYQENRTRHQCMKTRLVARLRKEHTERASLHRQQSQTYAILVQEWHRKLEKLESSQKRKTKEAKNREFFEKVFSELRKQREDKERFNRVGSRVKSDADLEEVLDCLQEQEEELSAEIKNALKARQIEDKKMRSYAVIPPLLLDAKQRKIAFQNRNGLLQPEELEALHRERKLINVWSQTEHELFKEKYLQHPKNFGAIAQSFEHKSVADCVHHYYLTKKAENYKQLLRKSRRTRSSRNNPNNKINNSNSTIGPIDILTTGVTTRLQREQQQKTQENPQNSSAASSSNSSATTITSSSSASSSSVSVTSSSSSVTTTASSSQPAATAASSSSGSGAAASLASESATTTATTTTIASTIAAASASVPSTGATTTTSSVLTTTSTSSASAKDAREANKENKEIKTEHKDSMLLKDIKEESQSSSETLSSREIKVEGKGALSSSSNTSLANVNNASGNIEPKDKKKSAAATGGSTGTSRSKDKKKDNHATPMETSDEETQAMDAMAHTIIANQA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01381265;
90% Identity
iTF_01380544;
80% Identity
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