Basic Information

Gene Symbol
stc
Assembly
GCA_900480045.1
Location
UXGC01000336.1:7988-13286[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2 3e+04 -4.4 1.6 15 19 574 578 573 578 0.81
2 16 0.14 2.2e+03 -0.5 0.1 4 10 607 613 606 614 0.94
3 16 0.00016 2.3 9.0 18.0 4 18 624 638 622 639 0.94
4 16 1e-07 0.0016 19.2 16.0 1 19 675 693 675 693 0.98
5 16 0.11 1.6e+03 -0.1 1.4 1 10 702 711 702 711 0.85
6 16 0.88 1.3e+04 -3.0 0.8 6 10 721 725 720 725 0.89
7 16 6.5e-10 9.7e-06 26.2 15.4 1 18 731 748 731 749 0.98
8 16 2 3e+04 -6.2 4.1 5 12 778 785 778 785 0.86
9 16 3.7e-05 0.55 11.0 12.4 4 18 796 810 789 811 0.86
10 16 1.6 2.4e+04 -3.8 2.0 5 10 840 845 840 845 0.93
11 16 0.012 1.9e+02 2.9 11.1 1 11 851 861 851 873 0.88
12 16 1.2e-10 1.8e-06 28.6 13.6 1 19 878 896 878 896 0.98
13 16 1.7 2.5e+04 -3.9 1.4 6 10 925 929 925 929 0.94
14 16 1.5 2.3e+04 -3.7 7.3 10 19 943 953 941 953 0.78
15 16 2.1e-06 0.031 15.0 13.7 1 16 989 1004 989 1015 0.86
16 16 4.7e-06 0.07 13.9 12.9 1 19 1021 1040 1021 1040 0.97

Sequence Information

Coding Sequence
atGGCTACCTGGGATGGCTCCTACCCAGAGCCAGATGGATCCAATTATTACGTTAATTCGAACAGTAATCATGCAGCTGGTAATGTTACAACGTGGGACTATTACGGGCCGAATGCCAATAATGGATACTCCCAGAACGCAGCTACTCCTTTTGCACTGGACACCATGGTTTTCGAGCAGAGCACACCTGCCTACTACCCTCACAATGACAGAAGTGCCATTCCTCCGCTGATTCCAGATGCAGCGAGTGCCAATGAGTATGGGGGCAATACGGTGCAACCAGCTAAAAACAAAacTCCAGGaacaaataaaacacaaaacaATGCTCCTCCTAATAGTCAATGTTTTTACGAAGATAACAAACCATTATCTCAACAAGCTCCAAACTATTATTACAACAAAAGTAACAACTATCAAAATGGTACAAAGCGAAAAGACACCAACAAGTCTTATCAAGTTTCTGATTTAGCTGAGCATTCAAATTTGCACGCCACAGCTAGTGAATTTATCCCAAACCAAAATAAACGAGATAGAACTATTTCTTCAAATATAAACAAAGGTAACAGAAGCCGAACAAATTTAGATTATCAAAATCAAGATACCAATCAAGCCACAAGCAATGTGTTCTTTGAAGATAATAAAGTAAGATACAATGATaggaaatttgaaaacaaaagagaTGCTGGCAAGAGGTGGAGAGATACACAGAATAGTCAACATCTGAATTTTAAGGATGATAAGAAAGATTATAgcagaaatcaaaattctcgAAGATATCAAAATGATCGATTCAATCAGAACAGAAACTTTTCTGATAAGCCAAGGAATAATCGGTCTGCTAAAGACAGTGTAGAAAATACTGCTTCtgaaagtaataatataaatccTGAAGCAGATAAAATTACTGAAACTCAAGATAATCCCAGTAACAGTAATACTGCTAATGCCACTAATGTAAATAACTTGCCACCTGAAACAGACAATGTGcaatctacaaaaaattctaaatcatttttaaatcatagtCGTGGAGAAAgatattatgataaaaaagagCGATATAATCCTAAAGATCCTAGAGATAGGAAAAGTAATTATCCTGAATATAATACTAGTtacaatagaaataattataacagagaaaataattacaacagagaaaataattacaccagagaaaataattataacagagaaaataattacaacagggaaaataattacaacagggaaaataattacaacagggaaaataattataacagagaaaacaattataatagagaaaacaattataacagagaaaataattataacagagaaaacaattataacagagaaaacaattataatagaGAGGGCAATTATaacagagaaaataaatatgaacGAAGGGAAAACAGGAATTCAACTACAGAAAATCGAGATAAGTCTGATAAGTCAATAACTGATTGGAGGCAAAGAAGCAATAATGATTCAGGAAATAAAAGTGCATTGCTCAAACGtccttattataaaaaatatgaaccaGATGATGATGCAAGTCAAAGGGAAAGATTAACAGAGCAGTTGAACCGTGGCCAATTAGAATGTCTAGTTTGCTGTGAATCAATAAGGCAAGCTGACTATGTATGGtcttgcaaaaattgctatcACGTCTTGCATTTGAAGTGTACTCAGAAATGGGCTTTATCTTCACAAGGGGACAGTGGTTGGCGTTGTCCAGCTTGTCAGAATGTGACCTCAGAAGTGCCCTCGGACTACGAGTGCTTCTGCGGCAAGACGAAGGCGCCGGAATGGAACCGTCGCGACATCGCACACTCCTGCGGCGAAATCTGCGGTCGATCGCGCTCGGACACTGGCTGTGTGCATAAGTGCACGCTACGCTGCCATCCGGGCTGCTGCCCGCCCTGCGTGGCCATGGTCACCAAGGCGTGCGGCTGCGGCCGCATGTCCCGCACTCAGAAGTGCAGCTCAGGGCCGTTACTCCAGTGCGACGAAATTTGCGATCGCGCGCTCAACTGCGGCGTGCACAAGTGCGAGGCCAAGTGCCATCACGGCAGCTGCGAGCCCTGCAGTAAGATCGTCAAGCAagAATGCTACTGCGGAAAGCACACCCGAGATGAAACTTGTGTCTTAGATCTACCGCCTGTGTACTCTTGTGAGAATGTGTGTGATAAAGTGTTAGATTGTGGTAATCATAAGTGCAAGGAAATTTGTCATCCTGGCGAGTGTGGACCTTGTGTTTTAAAACCTGAAACTGTTACCCACTGCTGCTGTGGACAAACTCTTTTAACTGTTAAGAGGGAGAGCTGCTTAGATCCAATCCCTACTTGTGATAAACAGTGCTGCAAGCGACTAAAATGCGGTCAACCAAGTAATCCTCATATCTGCCAAGCGAACTGCCATGAAGGTGACTGCCCAGAGTGCGAACTGATAACTAAAGTAAAGTGCCGCTGTGGCCACATGGATAAAGAAATTCCCTGTAAAGAATTAACAACTAAGGCTGATGATGCTCGTTGTGAAAAGAAATGTACAAAGAAACGTTCTTGTGGCAAGCACAAGTGCAATCAAATGTGTTGCATTGATATTGAACACATTTGTCCTCTTCCGTgctcaaaaaatttaagctgTGGTAGACACAAGTGTGAACAAACTTGTCACAGAGGTAGATGTCAGCCTTGCTGGCGCAGCAGTTTCGACGAGCTGTACTGCGAGTGCGGCGCGGCGGTGATCTACCCGCCGGTGGCCTGCGGAACTCGCCGGCCCGTCTGCGAGCGTCCCTGCAGCCGCGCGCACCCCTGCGACCACGAGGTGCTACACAACTGCCACAGCGATCCGAACTGCCCGCCCTGCACCGTGTTGACGCAAAAGTGGTGCTATGGCGAGCACGAGCTGCGAAAGGCCGTGCCTTGCTACGTGAACGAGGTCTCGTGCGGGCTGCCGTGCAACAAGCCGATCTCCTGCGGCCGGCATCGCTGCATCCAGATCTGCCATCCCGGGATCTGCGAGAAACCCGGCCAGGTGTGCGTGCAGCCATGCACCGTACCCCGGGAATTGTGCGGCCATATCTGCGCCGCGCCCTGCCACGAGGGCAAGTGCCCCGATGTACCTTGCAAAGAGATGGTCAAGGTGACGTGTCAATGTGGACATCGCACGATGTCGCGCGTGTGCGCGGAGAATTCACGCGACTACCAGAGGATAGCCAGTGGAATTTTGGCCAGCAAAATGGCAGACATGCAGCTGGGGTACACGGTTGATCTCGAGGAGGTGTTCGGCCAAGGGCCCAAGAAGCAAAACCAGCTGAAAACGTTGGAGTGCAATGAAGAGTGCAAAATAGTCGAGAGAAATCGCCGAATGACCCTTGGCTTGCAGATCGTCAATCCGGATTTGAGCGGAAAACTACTGCCTAGGTACAGCGAGCACATGAAGCAGTGGGGCAAGAAAGATCCAGCCTTTTGCCAAATGGTTCACGATAGACTCACGGAATTGGTGCAGCTGGCCAAGACGTCGAAGCAAAAGTCGCGCAGTTTCTCGTTCGAAAGCATGAACAGAGACAAGAGGCAGTTTGTGCACGAGTCGTGCGAGCATTTCGGATGCGAGAGCCAAGCCTACGATCAAGAACCCAAACGCAATGTTGTGGCGACGGCAGTTAAAGATAAATGCTGGTTACCAAGTTACAGTTTATTAGAATTGTTGCAAAGAGAAAATGGTCAACGAAAAGTACCAGGACCAATGTTGAACAAGTCAAAACTAAACAGCACTGACAGGACTGTGGATGTTTTGCAgctaaatacaaaaaagagtCTGAAACCTCTGCCTACAACTTCGGCTTCGCCGTCGAAGTCACCTGAACCTGAAAtagattatttcaattataaggGTTGA
Protein Sequence
MATWDGSYPEPDGSNYYVNSNSNHAAGNVTTWDYYGPNANNGYSQNAATPFALDTMVFEQSTPAYYPHNDRSAIPPLIPDAASANEYGGNTVQPAKNKTPGTNKTQNNAPPNSQCFYEDNKPLSQQAPNYYYNKSNNYQNGTKRKDTNKSYQVSDLAEHSNLHATASEFIPNQNKRDRTISSNINKGNRSRTNLDYQNQDTNQATSNVFFEDNKVRYNDRKFENKRDAGKRWRDTQNSQHLNFKDDKKDYSRNQNSRRYQNDRFNQNRNFSDKPRNNRSAKDSVENTASESNNINPEADKITETQDNPSNSNTANATNVNNLPPETDNVQSTKNSKSFLNHSRGERYYDKKERYNPKDPRDRKSNYPEYNTSYNRNNYNRENNYNRENNYTRENNYNRENNYNRENNYNRENNYNRENNYNRENNYNRENNYNRENNYNRENNYNRENNYNREGNYNRENKYERRENRNSTTENRDKSDKSITDWRQRSNNDSGNKSALLKRPYYKKYEPDDDASQRERLTEQLNRGQLECLVCCESIRQADYVWSCKNCYHVLHLKCTQKWALSSQGDSGWRCPACQNVTSEVPSDYECFCGKTKAPEWNRRDIAHSCGEICGRSRSDTGCVHKCTLRCHPGCCPPCVAMVTKACGCGRMSRTQKCSSGPLLQCDEICDRALNCGVHKCEAKCHHGSCEPCSKIVKQECYCGKHTRDETCVLDLPPVYSCENVCDKVLDCGNHKCKEICHPGECGPCVLKPETVTHCCCGQTLLTVKRESCLDPIPTCDKQCCKRLKCGQPSNPHICQANCHEGDCPECELITKVKCRCGHMDKEIPCKELTTKADDARCEKKCTKKRSCGKHKCNQMCCIDIEHICPLPCSKNLSCGRHKCEQTCHRGRCQPCWRSSFDELYCECGAAVIYPPVACGTRRPVCERPCSRAHPCDHEVLHNCHSDPNCPPCTVLTQKWCYGEHELRKAVPCYVNEVSCGLPCNKPISCGRHRCIQICHPGICEKPGQVCVQPCTVPRELCGHICAAPCHEGKCPDVPCKEMVKVTCQCGHRTMSRVCAENSRDYQRIASGILASKMADMQLGYTVDLEEVFGQGPKKQNQLKTLECNEECKIVERNRRMTLGLQIVNPDLSGKLLPRYSEHMKQWGKKDPAFCQMVHDRLTELVQLAKTSKQKSRSFSFESMNRDKRQFVHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLELLQRENGQRKVPGPMLNKSKLNSTDRTVDVLQLNTKKSLKPLPTTSASPSKSPEPEIDYFNYKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00714069; iTF_00714847;
90% Identity
iTF_00714069;
80% Identity
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