Eadl007662.1
Basic Information
- Insect
- Eurytoma adleriae
- Gene Symbol
- PRDM5
- Assembly
- GCA_900480045.1
- Location
- UXGC01000129.1:108011-111251[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0026 0.28 12.4 0.2 1 23 160 183 160 183 0.90 2 17 4.4 4.7e+02 2.3 2.0 3 23 194 215 193 215 0.94 3 17 0.21 22 6.5 2.1 1 21 221 241 221 242 0.87 4 17 0.0001 0.011 16.9 0.2 1 23 253 276 253 276 0.95 5 17 0.0071 0.75 11.1 1.2 1 19 292 310 292 311 0.96 6 17 5.9e-06 0.00063 20.8 2.2 1 23 326 348 326 348 0.95 7 17 0.00044 0.047 14.9 0.1 1 23 354 376 354 376 0.97 8 17 0.00031 0.033 15.4 0.5 1 23 382 405 382 405 0.97 9 17 0.27 28 6.1 6.6 3 23 543 564 541 564 0.95 10 17 2.3e-06 0.00024 22.1 0.5 2 23 571 592 570 592 0.95 11 17 0.073 7.8 7.9 6.5 1 23 601 624 601 624 0.95 12 17 0.005 0.53 11.6 3.0 1 23 630 652 630 652 0.96 13 17 1.4e-05 0.0014 19.6 1.0 1 23 657 680 657 680 0.96 14 17 0.094 10 7.5 2.0 1 23 686 708 686 712 0.80 15 17 0.0005 0.053 14.7 3.1 1 23 712 735 712 735 0.96 16 17 0.037 3.9 8.8 0.8 3 23 743 763 742 763 0.98 17 17 3.7e-05 0.0039 18.3 1.2 1 23 769 792 769 792 0.95
Sequence Information
- Coding Sequence
- ATGCTACCTCGCGAGGTCAAGCCGAGCAGCTCGGCGACCATCTCGACAGTACGAGGGAACGGCTGCGAAGGCGAGGAACCTGCATCCGATTCTGCTCCTGTAACCAGATCTGCTAAAATTCGTTTCAGGGAATCACTGGACAAGAGTAATCCAACACCGGAAGACGAGCCAACAGCGAAGAAGCCAAATCCCCAGCGTAAGTGTACCCCGGATGCCGCGACTCCCGAAACCGCGTCGGTCGCGAAGAAGTACTTTCTGCGAGGTACGTCGTCGAAAGATGCAGCGAAGGGAGAGCAGGGGGGCGCGGAGGTGCCCGACGACGTGGACGAGCTGATGACGCTGCTGGCGATGTACAAGGAACTACCGGACGGCGGCTTCGTGTGTCAGCTGTGCGAGAGCTCGGAGGGCGTGAACGTGCTGCAGGACAAGCCGCACGTCGTGCGCCACGTAATCCGATCCCACGGCTTCAGCCATGCCCACGAGTGCCCCAGCTGCCCGAGCAGCTTCAAGCGGGAGTCGTGGCTGGCGAGCCACGTCGACGCGCTGCACAAGACCGAGAAGCTCCAGCGGTACGTCGACTGCGCGAGGTGCTCGCACCGCAGCAAGGACGAGACGCTGCTCCGGCTCCACGTGCTCAGGAAGCACGTGGCCGTCTGCCGGTACGTCTGCGGCTGCTGCGGCAAGTGCTTCAGGACCTCGGCGGCCAAGAGCGAGCACGAGCGCCTCGCCGGCTTCCGGAACAAACCAAAGACCAAGTTCGAGTGCGACAGGTGCCAGATCGTAACCAAGACTAAAGACGACCTGGAGAGGCACATTAAAGACGTGCATTCCGGCTGCCACTTCCGCATGATCTACAGGTCGTCGAAGCTGCAGTACAAGTGTCTGATATGCAGCAAAATATTCGTCTCGAAGAAGTCCTTCCACGAGCACGCGCCCTGCCAGGACAGCCCGGCCGAGGGCAACGAGGTGGAGGGCTTCCTGTGCAGCGAGTGCGGCAAGCGGCTGTCGAGCAAGGACCACCTGAAGAAGCACGCGCGCGTCCACAGCGGCGAGCGACCCTACCCCTGCCCGGAGTGCGGCCAGACCTTCGCCCTGCGCAACACCATGCGCATCCACGCGCTCTCGCACTGCGGCATCAAGCCTTACGTCTGCGAGATATGCCGTTTCAACTACTCGCAGCGGTCGGCCCTCATGATACACTGGAAGAGCAAGCACAAGGgcatgccgccgccgccgcccgtcGAAATCCACCAGTACTTCGACGCGAACGGCCAGCTGCTCTCCATgaAATACAATTCTCGTTTGAGGAATAACAGTTCCAAGTCCCGGATAAGAGTGCGCACAACGTCAGAACTTACCAATCCTCCACCAGTCTTGGGAACAAGATCGTCATCGCccagagttttaaaaaaagcggcAAAGACCATGcctaaaaaaactaaacaagTCACCTCCAAGAGAAAAAACTCGACTTCAATAGCTAAACGACAGGAGGAAGCGACTGCCAGCGTTTCTGCACCTCCAgctaaaaaagcaaaagtcGTCGATATTCCAAAGCAAGAAAGTCAaccaaaagaagaagaagaaaagttcgattttaaaaagttaaaagggGGTGGTTTTGGTTGTACACACTGCTTCCAGAAATTCAGCCACCGTTACAAGGTGAAGCAGCACGTGAAGTTGAAGCACGAGCCGCGCGAGGTAATCACTTGCGCCGACTGCGGCAAAAAATTCAAGTCCAAATACCAATTGAACGCGCACGCGAATCAGCATCGCGAGAACAGTAGCGACTATCTTTTCTGTTGCGATAAATGCGACTACCGCGCCAAGTCTAAGCACTACCTAAAAACCCACGTGATTCGCAAGCACACTACCGAGTACAAATTCGAGTGCGCTCACTGCGACAAACGATTCAAAATGAAGATGGACCTAAAGTTCCACCTGGGCACCCACGGAACCTCGCAGCATATGTGCGACGCCTGCGGCCGCATGTACTCGAGCCAGGACTCGCTCCAGAAACACCGGCGCGTGGTCCACTTGAATGACTACAAATTCCAGTGCGATATCTGCCACCAAAAGCTACTGACGGAGGCGAACTACAAGAGTCACCTGGAGTCGCACAAAAAGATGCACAGCTGCGATGAGTGCGACCTCAAGTTCACCAAGAAGTACTACGTGACGCGGCACAAGAAACGTGTGCACAAGGTTGAGAAGACGAATCTGTGCCGCGTGTGCGGCAAGGCGTTCGTCTGCATGGCGACGCTCAGGGTGCACTACCTGACTCACGTGAAGATTAAGCCTTATCTGTGCAACGTGTGCGGATACAGCTTCACCCAGCGATCTTCGATGATGCTGCACTGGAAGCGAAAACATCCGGATGCAGAGGAGCCACCTCCACCAGTAATACTTACCAATTTCTTTGATTCCATAGAAACTGAAGTCGATAAAATCGCCGAGAAGAACAACTCGAGTGACAATGGCTTGTAA
- Protein Sequence
- MLPREVKPSSSATISTVRGNGCEGEEPASDSAPVTRSAKIRFRESLDKSNPTPEDEPTAKKPNPQRKCTPDAATPETASVAKKYFLRGTSSKDAAKGEQGGAEVPDDVDELMTLLAMYKELPDGGFVCQLCESSEGVNVLQDKPHVVRHVIRSHGFSHAHECPSCPSSFKRESWLASHVDALHKTEKLQRYVDCARCSHRSKDETLLRLHVLRKHVAVCRYVCGCCGKCFRTSAAKSEHERLAGFRNKPKTKFECDRCQIVTKTKDDLERHIKDVHSGCHFRMIYRSSKLQYKCLICSKIFVSKKSFHEHAPCQDSPAEGNEVEGFLCSECGKRLSSKDHLKKHARVHSGERPYPCPECGQTFALRNTMRIHALSHCGIKPYVCEICRFNYSQRSALMIHWKSKHKGMPPPPPVEIHQYFDANGQLLSMKYNSRLRNNSSKSRIRVRTTSELTNPPPVLGTRSSSPRVLKKAAKTMPKKTKQVTSKRKNSTSIAKRQEEATASVSAPPAKKAKVVDIPKQESQPKEEEEKFDFKKLKGGGFGCTHCFQKFSHRYKVKQHVKLKHEPREVITCADCGKKFKSKYQLNAHANQHRENSSDYLFCCDKCDYRAKSKHYLKTHVIRKHTTEYKFECAHCDKRFKMKMDLKFHLGTHGTSQHMCDACGRMYSSQDSLQKHRRVVHLNDYKFQCDICHQKLLTEANYKSHLESHKKMHSCDECDLKFTKKYYVTRHKKRVHKVEKTNLCRVCGKAFVCMATLRVHYLTHVKIKPYLCNVCGYSFTQRSSMMLHWKRKHPDAEEPPPPVILTNFFDSIETEVDKIAEKNNSSDNGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01380799;
- 90% Identity
- iTF_00713839;
- 80% Identity
- -