Eman022597.1
Basic Information
- Insect
- Eurema mandarina
- Gene Symbol
- -
- Assembly
- GCA_018238005.1
- Location
- DWAJ01023600.1:351-2189[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-11 2e-08 34.4 0.0 3 37 17 51 15 58 0.91
Sequence Information
- Coding Sequence
- ATGGTCCGCACATACAACAGGAAGACCGATCAGCATTCATGGTCTATGGAAGCTATGAAACAAGCTGTACACAGGGTGGTGTCTGGAGAAATAGGCTACAGGAAAGCAGCAATTCTCCACAATGTTCCACAAACGACATTGGAacgttatgttattaaatatcggGGCAATCCAGACAACAGCATCTTTCAAAAGAAATTGGGCCATTTCCAAAGCGTGTTTTCTCCCGATCAAGAGAGAgaattaattgattatataaaactgatgGAAGCACGGTTTCATGGATTGACTTCGCGTGACCTGCGCAAACTTGCATTTGAACTGGCCCAAAAAAATGGAATTCCTCATAAATTTGATTCAGAGGGCGGTTTGGCTGGAATAGATTGGTTAAAAGGATTCCTGAAAAGACATCCAGATATTAGCTACAGAAAACCTGAACCAACATCAGCAGCTAGAGCTATGGGATTCAATAGAGTAGCAGTTGAAAGCTTTTTTCAACTTTTAGAAAATGTTTACGATAAACATAAACTTACTCCACAAAGGATTTTCAATGTTGACGACACAGGTGTGTCTACAGTACCCAAAAGTCAATCTAAAGTCCTTGCTACTTGTGGCAAGAGACAGGTAGGGACACTGACCTCCGCAGAAAGGGGAAAACTAATGACCACAATTCTGTGCTTCAGCGCAGTTGGCAACTATATGCCGCCAATGTTCATATTTCCAAGGAAGCGCATGAAACCGGAGTTACTTGATGGGGCACCAACTGGGTCTTGGGGAGAATGTCACGAATCTGGGTGGATCCAGGGTCCCTTGTTTGTCTGCTGGCTCAAGAGATTTATTGAGTGGTCGCATTCCACTAAAGATAATCCAGCACTTTTATTGCTAGACGGTCATGCAACACACGTGAAATCTCTAGAGGTCATTGATTTGGCTCGCGAAAATGGTGTTATATTATTGTGCTTTCCACCTCACTGCACACACCGACTCCAACCGCTGGATGTTGGGTTCATGAAACCTATAAGCACATATTATTCCAGCGAAATAAAGAATTGGTTGCGGTGCCATCCTATTAATGCATTCAGAGCAACAGGTATATGGCCTATAAACAAGGATATTTTCACTGACGCAGATTTTGCACCTGCGGACACTACAGATAATCCTGAGCCTGTTGAGGTGCCTTTAGTTAACGCAGCCATTTTGCAGAGAGACAACACTCCAGTGAGACAAGAAACGCCAGAAGACGACCGTGGTTCCAAGACGCCAGCCAGACAACCACCCCAAGAAATTTTGACTGACAACAAGACACTACCACCATCGCAAATACCACAACGGGATAAAAACATACCAACCACCCCTAGGCAACCTTCTCCACAACCTGGTTGTTCTTGGATGGTCGATAGGCCATCGAGCTTTGCAACAACTCCAGAACAAATAATGCCAGTGCCTAAGGAGAAAAGAACAAGCAGAAGAGTTAGTAAGCATCGAGGGAAAACAGCAATCATCACAGAATCACCGTACAAAAACGAACTTCTAGCCATAAAAAAGGGCGCAGAATTAAAAGAAGAGAAAAAGAAGGTCGCTAAAGATTTGAAATTGGAATCCATTGAACAGAAGAAAAGAAAGGTTGTCAAAAAGAAAGGCTTGTTGCCTGAAGAAGTAAGCTCTGGAAAAGGTGATGATGATGCTGAATGTATCTATTGTGGTTACTTGTGGTCAGAATCAACCGAGGGATGGATACGTTGTGTAAGATGTCTTCGATGGGCACACTACTCTTGTGCTGGAGAAGATGAAAAAAATGAAGAGGCTACTCATTTATGTGCATTATGCAttgaaaactaa
- Protein Sequence
- MVRTYNRKTDQHSWSMEAMKQAVHRVVSGEIGYRKAAILHNVPQTTLERYVIKYRGNPDNSIFQKKLGHFQSVFSPDQERELIDYIKLMEARFHGLTSRDLRKLAFELAQKNGIPHKFDSEGGLAGIDWLKGFLKRHPDISYRKPEPTSAARAMGFNRVAVESFFQLLENVYDKHKLTPQRIFNVDDTGVSTVPKSQSKVLATCGKRQVGTLTSAERGKLMTTILCFSAVGNYMPPMFIFPRKRMKPELLDGAPTGSWGECHESGWIQGPLFVCWLKRFIEWSHSTKDNPALLLLDGHATHVKSLEVIDLARENGVILLCFPPHCTHRLQPLDVGFMKPISTYYSSEIKNWLRCHPINAFRATGIWPINKDIFTDADFAPADTTDNPEPVEVPLVNAAILQRDNTPVRQETPEDDRGSKTPARQPPQEILTDNKTLPPSQIPQRDKNIPTTPRQPSPQPGCSWMVDRPSSFATTPEQIMPVPKEKRTSRRVSKHRGKTAIITESPYKNELLAIKKGAELKEEKKKVAKDLKLESIEQKKRKVVKKKGLLPEEVSSGKGDDDAECIYCGYLWSESTEGWIRCVRCLRWAHYSCAGEDEKNEEATHLCALCIEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00247980; iTF_01264355; iTF_01526957; iTF_00445039; iTF_01091640; iTF_00121335; iTF_01543848; iTF_01543830; iTF_01543831; iTF_00121336;
- 90% Identity
- -
- 80% Identity
- -