Eman007117.1
Basic Information
- Insect
- Eurema mandarina
- Gene Symbol
- -
- Assembly
- GCA_018238005.1
- Location
- DWAJ01003364.1:10976-12790[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.7e-12 4.8e-09 36.4 0.0 3 40 16 53 14 56 0.92 2 2 5.6 4.7e+03 -2.0 0.0 22 31 175 184 175 187 0.80
Sequence Information
- Coding Sequence
- atggCAACAACTCACAAATGCAAGAAGAGAAAGAGATGGGAAAAGGAGAAAATGGACGCTGCTATTGCCGCTGTGAGAGAAAAGAGGATGGGTTACTTAAAGGCAGCTAAACAGTTCAACGTTCCCAGGTCAACACTATTTCGATTTGTTAATGATAAAGCCTCTACTATTGAATCGATAACAAACAAAGTTATTGGTCGAAGGCCAGTTTTTGATCAAGATATTGAAAATCTGCTGGTAGACTACGTATTAACAATGGAAAGTAAGTTTTATGGGTTGACCAGAATGGATTTGCGCCGTTTGGCATATCAACTAGctcttaaaaacaatttgaaacaCCCTTTTAAAGAAGGGTTTGCTGGCAGACACTGGCTGAAAGGGTTTCTAAGACGACATAAGGATATTTTGTCTATAAGACAACCAACTGGTACGTCATATGCAAGAGTTAATGGGTTTACTAAAGAAAGAATGGACGAATTTTACGACAATCTTGAAAAAATTTTAGCTGATAAGTGTTACCCTGCTGCGCGGATATTTAACATTGATGAGAGTGGTCTCTCCATAGTACAAAGcaaaataccaaaaataataGCTCGAAAAGGAAAGAAACAGATCGGAGCAATGACTTCAGCCGAAAGGGGTACTTTAATAACTATTGTAGTTTCTATGAGCCCTGCAGGTATATTTGTCCCTCCCATGATAATTTTCCCGCGTAAGAATATGTCAAATGCTTTAATGAGAGGAGCTCCACTTGGTTCTATAGGAAGAGTACATCCATCGGGATGGATTCAAACTCACCTATTTACGGAATGGTTTCAACACTTCATAGAATACGTGAAACCAACAGAAGCGTCCCCAGTGCTCTTGATTCTTGATGGTCATTACAGTCACACCAAGAATATAGATTTGATAGATCTAGCAAAACAACATTGTGTGACAATTCTATCACTACCACCTAATTGTACGCATAAAATTCAACCAATGGACCGCACTTTCATGGGAcctttaaaatcttattacaGCGAAGAAGTTCAGATGTTTCTCAGAGAAATTAATAGACCCTTAACGCCATATGATGTTGTTGAGCTATTCGGGAAAGCCTTTATTAAGTGCCAAACTGAAGAAATTGCTGCCAATGGTTTTAAAGTTGGTGGCATATATCCATTCAACCGATATGTATTTACTCAGTCCGATTATATAGCCGCTGCTGTAGATTTTGAAGAGGATCAAAACTGTCAAACTATTTCAACAACAACTCGCTCCCCCATAGTTGCTTCTGTGGGATCGgagaattttaataacacgGAACCAGAGCCATTGCCGTCGGGTAGTAGGACAGAAATTCCCTCGCTTATTACTCCCTCACATATTTCTCCCGTGCCCATAGTAAAAAAGAGAACTAGCAATAGAGGCCGTAAACTAGCAAGACATAACATTGCCCAGACAATAGAATTTGAGAATTCACAACTTAAGAAgtcaaataaagaaaacagaaCACAAAAAAACAAGGGAAAAGGCaagaagaaaataacaaaaaagacTAAGAAAAGAAATACGGTAGACAGTGACTCATCAGATTCGAGTCCAGAGGTTGTATCTGATAATAACACAGACTCTTCCGATAATGTAGCAACAAGACATGAGAATCAAGTCCCTAATGACAACgacgttgaatgttttttcTGTAACGGAAAATATAGCGAAGATAAACGGGGTGAAGAATGGGTACAGTGCTTAATGTGTGAATCGTGGGTTCACAATTCTTGTAGTGGCTATGAATCCGGTGTGTACATTTGTGAATATTGCAAGAATtag
- Protein Sequence
- MATTHKCKKRKRWEKEKMDAAIAAVREKRMGYLKAAKQFNVPRSTLFRFVNDKASTIESITNKVIGRRPVFDQDIENLLVDYVLTMESKFYGLTRMDLRRLAYQLALKNNLKHPFKEGFAGRHWLKGFLRRHKDILSIRQPTGTSYARVNGFTKERMDEFYDNLEKILADKCYPAARIFNIDESGLSIVQSKIPKIIARKGKKQIGAMTSAERGTLITIVVSMSPAGIFVPPMIIFPRKNMSNALMRGAPLGSIGRVHPSGWIQTHLFTEWFQHFIEYVKPTEASPVLLILDGHYSHTKNIDLIDLAKQHCVTILSLPPNCTHKIQPMDRTFMGPLKSYYSEEVQMFLREINRPLTPYDVVELFGKAFIKCQTEEIAANGFKVGGIYPFNRYVFTQSDYIAAAVDFEEDQNCQTISTTTRSPIVASVGSENFNNTEPEPLPSGSRTEIPSLITPSHISPVPIVKKRTSNRGRKLARHNIAQTIEFENSQLKKSNKENRTQKNKGKGKKKITKKTKKRNTVDSDSSDSSPEVVSDNNTDSSDNVATRHENQVPNDNDVECFFCNGKYSEDKRGEEWVQCLMCESWVHNSCSGYESGVYICEYCKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00784333;
- 90% Identity
- -
- 80% Identity
- -