Esim013779.2
Basic Information
- Insect
- Euproctis similis
- Gene Symbol
- -
- Assembly
- GCA_905147225.1
- Location
- LR990110.1:20747943-20761905[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.1e-05 0.0041 18.4 6.4 1 23 192 214 192 214 0.97 2 13 2.5e-06 0.00025 22.2 0.2 3 23 228 248 227 248 0.98 3 13 5.4e-05 0.0055 18.0 2.1 2 23 257 278 257 278 0.98 4 13 0.00026 0.026 15.9 1.6 3 23 286 306 284 306 0.95 5 13 1.4e-06 0.00014 23.1 0.8 1 23 312 334 312 334 0.98 6 13 1.7e-05 0.0017 19.6 8.6 2 23 341 362 340 362 0.97 7 13 3e-05 0.003 18.8 0.8 1 23 368 390 368 390 0.97 8 13 4.9e-07 4.9e-05 24.5 0.8 1 23 396 418 396 418 0.99 9 13 0.0012 0.12 13.8 3.3 1 23 424 446 424 446 0.98 10 13 0.0011 0.11 13.9 1.3 1 23 452 474 452 474 0.96 11 13 1.4e-05 0.0014 19.9 0.6 1 23 480 502 480 502 0.97 12 13 8.3e-06 0.00083 20.6 2.4 1 23 508 530 508 530 0.98 13 13 0.00014 0.014 16.7 4.4 1 23 607 629 607 629 0.97
Sequence Information
- Coding Sequence
- ATGGCTGCTCCTACTGCGATTGCACTGAAAATTCAAACATTAAAACTTGATAAAATATGTCGAGCATGTTTGGAAACAAAAAAAGATATGAGACCCTTGTTCGAGCAGCTGACTGCAACAATGCTGATGGGCATATCGAAAGTTCAGGTGGAAGTAGGAGATGGTCTCCCCGCCCAGCTGTGTTTACAATGTGTGCATCAAATATCACGCTGCCACGCCTTCAAAGAGATGGCAGAGAGAAATGATCTTGCACTGCGCGAACACGCCAAATATCTTGCTGAACAGGAATTTAAGCGAGAAAGAGAAGAGAAGGAAAACTTGATGTCGTTGAACTGTGCGGAACCATATATGCAGTATATGGAAGTAGCTAATACGAACCAGATCTTGGAGGGATTTTTTAATGATACTCCTCAGCAGACACCAGCTGTCGAACAAAACGATAAGCCTGATTACGAGCCTGAAAAGATCGAACCTACAGTTGCAACAAAAGACAAAGAGGGATTGAATTCAGACGAGGAGAATTACCTACAGTTGGTGGTTTTTCAAGCTACGTCCACAGTGTCTCCTGGCAGACACGTGTGCAACCTTTGTCACAAGGAATTCAAACACCCGCGTTGGTTGAAGCAGCATATGAGATTGCACACAAATTGGATAAAAGCAAATTGCAAGAAGCCACCGATGTGTCCCATTTGTGAGAGAACGTttaagGGCCCGGGTATGCTCAAAATGCACATGCGAACTCACGAACAAAGGCCTCCAAAGCAACCAACATGCTCTGTTTGTCAGCGTACCTTCCCAACGAAGACGTTGTTATACCGCCATAGACAAACACATTTTGAACAGAAGACTCATCTGTGCACCGTGTGTGATAAGAGGTTTTATAGTGGCTATGCTTTGAGATCACACATGGCCAGACACCGCGGAGAGAGGCCCTATGTATGTTCCAACTGTGGCAAGAGTTTCTACAACCCCACAGATTTGAAGGTTCACTTTCGCCTGCATACCGGCGAGAAGCCACTCAAATGTACTGAATGCAACAAAACTTTCCGTCGGCACTCGACCTTGTGTCAACATATGAAAAAACACCGCGGCATACGGAACCACATCTGCAATGTCTGTAACAAAGGGTTTTACGAAGTGTCCAAACTTAACGCTCATATGAGAGTACATACCGGTGAGCGTCCATACGAGTGTCCGTACTGTTCGCGCCGGTTCGCCCAACAGTCTGCGCTCATCTACCACCGGCGCACTCACACCGGCGAGAAGCCATACTGCTGCAAGTTATGCTCCGCTAAGTTCACCACCTCCTCGGCCAGAAATAACCACATGATTACGCATACGGGCAACAAAAGGTTCGTGTGTCCGGTGTGCTTCAAGGGCTGCTCGTCGCGCACGGAACTGCGCGTACACGGCAGCAAGCACACCGGAGAGAAGCTGTTCGCGTGCGCGGAGTGCGGCCAGAGGTTCAGCTCCGCCTCGTACCTGGCGGTGCACCGGCGGCACCACACGGGCGAGCTGCGCCACCGCTGCGCGCTCTGCGGGAAGGGTTTCATCGAGTCAAGCTCGTACAAGAAGCATATGAAGACGCACGAAGTAAAGACAGAGACGGAATCATCCAGCTCCGAGAACGGTGTGGAAGGTCAGATTCAGATCAAAGATGAAACAGGCATCGCCAACAATCAACAAACTGTGGAAGATGTACAAATACAAGGTGTTCAAAATCAAAACCAAGGACACATGGAAATCCAAGTGCCAGCTTCTGATCCCGCTGTTATGGTGCCGGTCCAAGAAGAGAACAATAGCAACCAACAAAAGAAACACAAGTGCACAATTTGCGTCAAATCATACATGTATCCTCATAATTTGAAGAAACACATGTTGTTACATGCACAGGAACGCGCACGCAATAATGAACAAATAATCTTCCTTCAACAACAACCCCAAACGCAACAGCAGGTGCAGCAACACACGCAACAGttgcagcagcagcagcatgTGCAACAGCAGCAAGCCCAAGTTCAACAGCAACAGGTTCAGGTGCAACAGCAACAAGTACAAGTCCAACAACAGCAGGTGCAGCAGCAACAagtacaacaacaacaacaacagcaCCACCAGCAGCAGATGCAGCAGCAGGCGGTGCTGCAGGTGGGCAACGTGCAGCAGCTGGCTGTCCCGATACACGCGCAGCACGTGCAGCAGGGGATCACGGTCTCCGGAGTGCAGGGCCAGCACAGTTACCCAGTGATCTCGTCGGTACAATCGTTGCAGTTGCAGCAAACACAACAGGTTAACACGCAACAGCCTCAACAACTGCAAGTCCAGACCATACAAATACACCCTCAACATCAACCGATACAAATACACGCCGTGGGCGTACAGCAGGTCCAGCAACAACAGCTACATGTCGCCACGTCCACCTGCCAGACAATGCTGCCGAACATATTACAGTTACAACCGGCGACAGTGGCGGTGTCCGGGCTGGGGGGAGTCCAGGGGGAGCTGGGGGGCGTGACACACCGCATCATATTGCAGCCGCAGCCCTCCGCCGCGCACCCTGCTGTCTACACCATACACCACTGA
- Protein Sequence
- MAAPTAIALKIQTLKLDKICRACLETKKDMRPLFEQLTATMLMGISKVQVEVGDGLPAQLCLQCVHQISRCHAFKEMAERNDLALREHAKYLAEQEFKREREEKENLMSLNCAEPYMQYMEVANTNQILEGFFNDTPQQTPAVEQNDKPDYEPEKIEPTVATKDKEGLNSDEENYLQLVVFQATSTVSPGRHVCNLCHKEFKHPRWLKQHMRLHTNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFPTKTLLYRHRQTHFEQKTHLCTVCDKRFYSGYALRSHMARHRGERPYVCSNCGKSFYNPTDLKVHFRLHTGEKPLKCTECNKTFRRHSTLCQHMKKHRGIRNHICNVCNKGFYEVSKLNAHMRVHTGERPYECPYCSRRFAQQSALIYHRRTHTGEKPYCCKLCSAKFTTSSARNNHMITHTGNKRFVCPVCFKGCSSRTELRVHGSKHTGEKLFACAECGQRFSSASYLAVHRRHHTGELRHRCALCGKGFIESSSYKKHMKTHEVKTETESSSSENGVEGQIQIKDETGIANNQQTVEDVQIQGVQNQNQGHMEIQVPASDPAVMVPVQEENNSNQQKKHKCTICVKSYMYPHNLKKHMLLHAQERARNNEQIIFLQQQPQTQQQVQQHTQQLQQQQHVQQQQAQVQQQQVQVQQQQVQVQQQQVQQQQVQQQQQQHHQQQMQQQAVLQVGNVQQLAVPIHAQHVQQGITVSGVQGQHSYPVISSVQSLQLQQTQQVNTQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSTCQTMLPNILQLQPATVAVSGLGGVQGELGGVTHRIILQPQPSAAHPAVYTIHH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00281609;
- 90% Identity
- -
- 80% Identity
- -