Cnup040041.1
Basic Information
- Insect
- Catocala nupta
- Gene Symbol
- -
- Assembly
- GCA_963675205.1
- Location
- OY776098.1:16334988-16350838[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.4e-05 0.0042 19.2 6.8 1 23 120 142 120 142 0.98 2 13 2.4e-06 0.00041 22.4 0.2 3 23 156 176 155 176 0.98 3 13 5.1e-05 0.0089 18.2 2.1 2 23 185 206 185 206 0.98 4 13 0.00024 0.042 16.0 1.6 3 23 214 234 212 234 0.95 5 13 1.5e-06 0.00026 23.0 0.9 1 23 240 262 240 262 0.98 6 13 1.7e-05 0.0029 19.7 8.4 2 23 269 290 268 290 0.97 7 13 2.2e-05 0.0038 19.4 0.8 1 23 296 318 296 318 0.98 8 13 1.1e-05 0.0019 20.3 1.6 1 23 324 346 324 346 0.99 9 13 0.00013 0.024 16.9 1.1 1 23 352 374 352 374 0.98 10 13 0.00051 0.09 15.0 2.1 1 23 380 402 380 402 0.98 11 13 2.2e-05 0.0038 19.3 0.9 1 23 408 430 408 430 0.98 12 13 6.5e-06 0.0011 21.0 0.7 1 23 436 458 436 458 0.99 13 13 0.0003 0.053 15.7 3.1 1 23 532 554 532 554 0.98
Sequence Information
- Coding Sequence
- ATGGCGGAAAGGAACGACGCGGCACTCCGCGAACACGCCAAGTTTCTCGCCGAGCAGGCCTACAAGAGAGAAAGGGAAGAGAAAGAGAAGCTGCTGAACATGAACTGTACGGAGCCATACATGCAGTACATGGAAGTGCCGATATCCAACTCCACTAATATACTTGAAGGGTTCTTCGGCTCCACGCCTGAGCCGACCTCGCCTACCCCCGAACCGGAGACCAAAAACGATTTTGAGTCTGTGAAGcacGAAACGGCTATAGTTCCTTCAAAAGACAAGGATGGGTTAAACTCGGACGAGGAGAACTACCTTCAGCTGGTGGTGTTCCAAGCGACGTCGACGGTGTCCCCCGGGCGGCACGTGTGCAACCTCTGCCACAAGGAGTTCAAACACCCGCGGTGGTTGAAGCAGCACATGAGGTCCCATACGAACTGGATTAAGGCCAATTGTAAGAAGCCGCCCATGTGTCCTATTTGTGAGAGAACTTTTAAGGGCCCCGGCATGTTAAAGATGCACATGCGCACTCACGAGCAGCGGCCGCCTAAACAGCCGACGTGTTCCGTATGCCAGCGCACGTTCCCCACCAAGACGTTACTGTACCGCCACAGGCAAACGCACTTCGAGCAGAAGACTCACCTGTGTACTGTGTGCGATAAAAGGTTCTACAGTGGGTATGCGCTGCGCTCGCACATGGCACGCCATCGAGGCGAGAGGCCGTACGTGTGTTCCACTTGTGGGAAAAGCTTCTATAACCCTACGGATTTGAAGGTCCACTTCCGCCTGCACACCGGTGAAAAGCCTCTGAAATGTTCGGAGTGCAACAAGACGTTCCGTCGTCACTCGACGTTGTGTCAACACATGAAGAAGCACCGCGGCATACGAAACCATGTATGCACTGTGTGCAACAAGGGCTTCTATGAAGTGTCTAAACTTAACGCACATATGAGAGTACATACTGGTGAGCGTCCATACGAGTGTCAGTTCTGTTCGCGGCGCTTCGCGCAGCAGTCGGCGCTGATCTACCACCGGCGCACGCACACCGGCGAGAAGCCCTACAGTTGCAAGCTATGCTCGGCGCGCTTTACCACCTCCTCCGCCAGGAACAACCATATGATCACGCACACCGGGAACAAGAGGTTCGTGTGCCCCGTGTGCTTCAAGGGTTGCACGTCCCGCACGGAACTGCGCGTGCACACGAGCAAGCACACCGGCGAGAAGCTGTTCGAGTGCGAGCAGTGCTCGCAGCGGTTCAGCTCCGCTTCGTACCTCGCCGTGCACCGCCGGTACCACACCGGCGAGATGAAGTACCAGTGCGTCGTCTGCGGGAAAGGTTACATAGAGTCGAGTTCGTACAAGAAGCACATGAAGAGCCACGAGGTGAAGTCGGAGACGGAGTCGTCGACGTCGGAGAACAGCGCGGAGGGGCAGCCCAAGGGCGCCGCGGATGGACTCGCCGAGCCAGCGCCCGCCGCCGCAGGCGACGCCGCCCAGGGCTCGCAGCAGGTGCAAGGACAAGTACAGATCCAAGTACAAAACAGCGAACAGGCGCTACAAGGTCAAGGTCAAGGAGAAAACACGCCCCAGCAGAAGAGGTACAAGTGCGGGCTCTGCGTCAAGACTTATATGTATCTACATAACCTTAAAAAGCACATGATGTTGCACGCACAACCACAAGAACGCGTCCGCAACTCGGAACAAATAATCTTCCTCCAACAACAGCCGCAGCCACAACAACAGCAGCAGACGCAACAGCAGCAGCAGCAACAACAAGCACAACAACACACGCAACAGTTGCAGCAACAACAGGTTCAAGTGCAgcagcaacaacaacaacagcaagtgCAACAGCAACAAGTACAGCAACATCACCAGCAGCAACAGATGCAGCAACAAGCCGTGTTACAAGTGGGCAACGTGCAACAGCTCGCGGTGCCTATACATGCGCAACACGTGCAACAAGGGATCACGGTTTCAGGAGTGCAGGGTCAGCACCCGTACCCCGTCATCTCTTCGGTGCAGTCGCTACAGCTTCAGCAAACACAACAGGTTAACACGCAACAGCCGCAGCAACTGCAAGTACAAACGATACAGATTCACCCGCAACACCAGCCCATACAAATACATGCGGTGGGCGTGCAGCAGGTTCAACAGCAACAGTTACACGTCGCTACCTCTACCTGTCAGACCATGCTACCTAACATATTGCAGTTACAACCGGCGACGGTGGCGGTATCGGGGCTGAGCCAGCAGGAGCTGGGCGGCGTCACGCACCGCATTATCCTGCAGCCGCAGCCCTCTGCCGCGCACCCAGCCGTCTACACCATACACCACTGA
- Protein Sequence
- MAERNDAALREHAKFLAEQAYKREREEKEKLLNMNCTEPYMQYMEVPISNSTNILEGFFGSTPEPTSPTPEPETKNDFESVKHETAIVPSKDKDGLNSDEENYLQLVVFQATSTVSPGRHVCNLCHKEFKHPRWLKQHMRSHTNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFPTKTLLYRHRQTHFEQKTHLCTVCDKRFYSGYALRSHMARHRGERPYVCSTCGKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHVCTVCNKGFYEVSKLNAHMRVHTGERPYECQFCSRRFAQQSALIYHRRTHTGEKPYSCKLCSARFTTSSARNNHMITHTGNKRFVCPVCFKGCTSRTELRVHTSKHTGEKLFECEQCSQRFSSASYLAVHRRYHTGEMKYQCVVCGKGYIESSSYKKHMKSHEVKSETESSTSENSAEGQPKGAADGLAEPAPAAAGDAAQGSQQVQGQVQIQVQNSEQALQGQGQGENTPQQKRYKCGLCVKTYMYLHNLKKHMMLHAQPQERVRNSEQIIFLQQQPQPQQQQQTQQQQQQQQAQQHTQQLQQQQVQVQQQQQQQQVQQQQVQQHHQQQQMQQQAVLQVGNVQQLAVPIHAQHVQQGITVSGVQGQHPYPVISSVQSLQLQQTQQVNTQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSTCQTMLPNILQLQPATVAVSGLSQQELGGVTHRIILQPQPSAAHPAVYTIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00709517;
- 90% Identity
- -
- 80% Identity
- -