Ekon052982.1
Basic Information
- Insect
- Eupristina koningsbergeri
- Gene Symbol
- -
- Assembly
- GCA_018907245.1
- Location
- JACCHV010002775.1:2028761-2034791[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.24 90 5.6 0.0 1 23 335 357 335 357 0.93 2 12 3.3 1.3e+03 2.0 1.1 2 19 360 377 359 379 0.88 3 12 2.4e-06 0.0009 21.3 4.2 2 23 418 439 417 439 0.97 4 12 7.5e-05 0.028 16.6 0.2 1 23 445 467 445 467 0.98 5 12 0.00043 0.16 14.3 2.6 1 23 473 495 473 495 0.98 6 12 3.3e-05 0.012 17.8 1.7 1 23 501 523 501 523 0.98 7 12 0.00012 0.047 16.0 1.5 1 23 529 551 529 551 0.98 8 12 4e-07 0.00015 23.8 0.5 1 23 559 581 559 581 0.98 9 12 0.0036 1.4 11.4 0.2 1 23 587 609 587 609 0.94 10 12 7.8e-06 0.0029 19.7 2.9 1 23 615 637 615 637 0.98 11 12 1.6e-05 0.0058 18.8 0.5 1 23 643 665 643 665 0.98 12 12 0.00033 0.12 14.6 2.4 1 23 671 693 671 693 0.97
Sequence Information
- Coding Sequence
- ATGTCAGTGGTCGAGGAAATTGATTACTTGTGCAGATTATGTGCCACAAAAATGGGTATTTTAATGGGCTTACCAATTTTTGAAGCCAGTGAACAAATGAGAAATATTGCTAAAAAAATTTCTGCTTGTTTACCCGTTCAGATTTCCATGACAGATCAATTACCTAAAATAATATGCCAAGAGTGTGCTTTTAAACTAGATGAATTCTTTGACTTTCGTGAAAAAGTTTTACAAACAGAAGGAATATTTATACAAATGCTGAAGTCCATCACAAAACAAGAAGTAAATTCTTTAGATAGTGTTAATATTAATGAAATCCAAGACAATATGGATAGCCTTACCAATAGTATTAATGAAATTCAAAATTCTAATATTACAAGGCATAATGTTTCAAATGGTATCCATACTATGTCTGTAATGAGTAACATAGCTCTTTCCAACAGACAAGTTGTATCACAAGAAGAAATAAGTCGAGAAGAAAATGATATAGAAGTTACAGGTTTTCATTTGGATGGAGATACTGTAAGAATGGTAGATGAACAAATGAGAGAGGTTTCTAATCAAGAAATAGCAATGCATTTGGAGGGTGATATGTCAGTTGAGAATTTGACAGTTGGTGATCATTTGACCCAACTAGACATCAATTACGTAGCTTCAATGGCCTCAGAAAACCAGGCGCAAAAGGAAATTCAGCATTATTGCGGCGAGGTCAAGTTTGCTAAGGAACTGGAAAACAGGTTGACTGGTTGCGAGCCTGACACAATTGTCCGACGGAGAAGTTTCCCACCGTCGAGAACGGAGAGCGACATCGACGACACTTGTGACGGTTCCCTGAGTGTTGCTGGTGCTACCGGACATACGTTCGTAATGCAGTCTGCGAGTCATGTTGATACTGCGGACACCTCCGAAGGAATCATGGTGCAGTACACGAAGACGACTAAGAATGCACTCTTGGAAAATGCACTCAACAATCCTACAATTGATGAGACTGAGACTAACTGGTATATTTGTCCATTCTGCAATGAAGCTGCGGCAGAACCAAATGACCTTGCTGTGCATTTTGAGCAACACTTTTGTCACTGTCCTAGTTGTGAATTATTCTTCACAAGCATCGAAGTACTGAATATGCATAGTCAAGATTGCATCGATGAAAAAACAAAGGATAAGAGTTTTGACGATTTAAATGAAAAACCGCAACCACCGACATCCGAGAAGAAGCAGCAAAGTTCTCGACCAAAATGGACTCCAAAGGTTTGCACTCATTGCGGAAAGCAGTATCGGACAAACTATAAATTGCAGGAACACATGCGAAAGCACACCGGTGAAAAGCCATTCCAATGCGTTCTTTGTGAGAAAGCCTTCCGGAGCAAAATTGGTCTGGCCCAGCATACAGCCACCCACACTGGACAATTTGATTTCAATTGCTCAACTTGTGGTAAGGGATTCCAATGTAAAAGCTACCTCATAGTTCACCAACGCGTTCACTCTGATCTCAAGCCATATTCCTGCACGACGTGTGGACAGAATTTTAAAACCAAACAGTCCCTTCTCGATCATGAGAACCGTCACATGGGAGTCAAGCCATATACTTGTGAGATATGCGGCAGAGGTTTTATTACCAAGGGTCTTTGCAAGAGTCATCAAAAGATACACTCGGGAATGGACAATAGACAGTATCCCTGTGTTGTGTGCAATAAAATGTTTGTTAGTAAAAGCTACCTCAACACGCATCTCAGAATTCACACGGGAGAGAAGCCCTACTTATGCGAAGTCTGTGGCAAGGGTTTTTTGACAAGGGTCGATCTGAAAATCCATTCAACGATGCACACGGGAGAAAAGAGCTTTAAGTGTGATCTTTGTGGAAAGGTGTTCGCTAGGAGATCAGCCCTACGTTGTCATCGTCGTTCGCACACTGGAGAACGTCCTTATCGGTGTGAGGTATGCGGTAAGACCTTCACCCAGTTTAGTCCTATGGCGATACACAAAAGACTGCATACGGGTGAGCGACCTTACGAGTGCGACGTGTGCGGCAAGGCATTTGTTTCAAGATCCACAATGATGTGTCACAGAAAGAAACATAATACGAACGAGACATCAGCAGAGAGCAAACACCCTAAGGAAGAACTCATTCAGAAAGAAGTAGTCTTTAAAGAAACACCTGATGCAAGTGTTTCTGTTGCTGACTGA
- Protein Sequence
- MSVVEEIDYLCRLCATKMGILMGLPIFEASEQMRNIAKKISACLPVQISMTDQLPKIICQECAFKLDEFFDFREKVLQTEGIFIQMLKSITKQEVNSLDSVNINEIQDNMDSLTNSINEIQNSNITRHNVSNGIHTMSVMSNIALSNRQVVSQEEISREENDIEVTGFHLDGDTVRMVDEQMREVSNQEIAMHLEGDMSVENLTVGDHLTQLDINYVASMASENQAQKEIQHYCGEVKFAKELENRLTGCEPDTIVRRRSFPPSRTESDIDDTCDGSLSVAGATGHTFVMQSASHVDTADTSEGIMVQYTKTTKNALLENALNNPTIDETETNWYICPFCNEAAAEPNDLAVHFEQHFCHCPSCELFFTSIEVLNMHSQDCIDEKTKDKSFDDLNEKPQPPTSEKKQQSSRPKWTPKVCTHCGKQYRTNYKLQEHMRKHTGEKPFQCVLCEKAFRSKIGLAQHTATHTGQFDFNCSTCGKGFQCKSYLIVHQRVHSDLKPYSCTTCGQNFKTKQSLLDHENRHMGVKPYTCEICGRGFITKGLCKSHQKIHSGMDNRQYPCVVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCDLCGKVFARRSALRCHRRSHTGERPYRCEVCGKTFTQFSPMAIHKRLHTGERPYECDVCGKAFVSRSTMMCHRKKHNTNETSAESKHPKEELIQKEVVFKETPDASVSVAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00708676; iTF_00845390; iTF_01216961; iTF_00305166; iTF_01524179; iTF_00464138; iTF_00305780;
- 90% Identity
- -
- 80% Identity
- -