Cfus014037.1
Basic Information
- Insect
- Ceratosolen fusciceps
- Gene Symbol
- -
- Assembly
- GCA_018883505.1
- Location
- RCIC01000006.1:5053115-5059029[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.29 29 5.5 0.0 1 23 341 363 341 363 0.93 2 12 0.38 38 5.1 0.6 2 19 366 383 365 385 0.90 3 12 2.7e-06 0.00027 21.3 4.2 2 23 424 445 423 445 0.97 4 12 8.3e-05 0.0085 16.6 0.2 1 23 451 473 451 473 0.98 5 12 0.00048 0.049 14.2 2.6 1 23 479 501 479 501 0.98 6 12 3.6e-05 0.0037 17.8 1.7 1 23 507 529 507 529 0.98 7 12 0.00014 0.014 15.9 1.5 1 23 535 557 535 557 0.98 8 12 2.4e-07 2.5e-05 24.6 0.5 1 23 565 587 565 587 0.98 9 12 0.004 0.41 11.3 0.2 1 23 593 615 593 615 0.94 10 12 8.6e-06 0.00088 19.7 2.9 1 23 621 643 621 643 0.98 11 12 1.7e-05 0.0018 18.8 0.5 1 23 649 671 649 671 0.98 12 12 0.00074 0.075 13.6 2.7 1 23 677 699 677 699 0.97
Sequence Information
- Coding Sequence
- ATGTCAGTTGTCGAAGAAATTGACTACTTGTGCAGATTGTGTGCAACGAAGATGGGTATTCTAATGGGTTTACCCATCTTTGAAGCTAATGAACAAATGAGAAACATAGATAAAAAAATATCTGCTTGCTTACCTGTTCAGATTTCTATAACTGATCAACTACCCAAGATAATATGTGAAGAATGTGCTTTTAAATTAGATGAATTTTTTGACTTTCGTGAAAAAGTTTTACAAACAGAAGGAATATTTATACAAATGCTAAAATCTATAACTAAGGAAGATATAAATTCTTTAGATAGTATTAGTATTAATGAAATCCAGGGGAACATGAATAGGCTTACCAATAGCATCAATGAAATCCAAAATTCAAATATTGGCAGGCATAATGTTCAGAATCGAATTCATGCTATATCTGTGATAGATAACATGGGTCTTAGCGAAAGACAGCGCGTTGTAACCCAAGATGAGATGTCTCGAGAAGAAGCGGATATAGAGGTTACAGATTTCCATTTAGATGGAGATACTGTAAGAATGGTAGACGAGCAAATGAGAGAGGTATCGAATCAAGAGATAGCGATGCATCTGGAAGGGGATATGGCGGTATCGGTGGAAAACCTGACGGTCGGAGCGCATCTGAGTCAATTGGACATCAACTACGTGACGTCGATGGCCTCGAATAGTCAAGCCCAGAAGGAGATGGTCCATTACTGCGACGAGGTGAAATTCGACTCGGTGGCTCCCAAGGAATTGGAAAACAGTCTCGGGAATTGCGAGGCCGCAGGTGTGCGACGAAGAAGCTTTACTTCCTCGAGGGTAGAGAGCGATATAGACGACGCTTGCGATGACCATATGAGTGTCGCCGAGGCATCGGCTCATCCCTTCGGCCTCTCATCCACGAGCCACGTCGACGCTTCCGACAACAATGACGGGATTATGGTGCAATACACGAAGAGTTCAAAAAATGCGCTTTTAGAGACTGCTCTTAGTAATCCGACGATGGACGAGACCGAGACGAACTGGTACATTTGCCCGTTCTGCAACGAAGCCGCAGCCGAGCCAAATAGTCTTGCCGTTCATTTCGAGCAGCACTTTTGCAGTTGCCCTAATTGCGAATTATTCTTCACGAGCATCGATGTCCTAAATCTGCACAGCCAAGATTGTCTCGAGGGGAAAAGTAAGAGCAACGACGACCTGTCGGAGGAGCAACGGGAGCCGACTTCGCGATCCGAGAAGAAGCAACAAGGCTCACGACCAAAATGGACTCCGAAGGTCTGCACCCATTGTGGGAAGCAGTATCGAACCAACTACAAGCTTCAGGAACACATGCGGAAGCACACGGGGGAGAAGCCCTTTCAGTGCGTTCTCTGCGAGAAGGCATTCCGGAGCAAAATCGGCCTCGCGCAACACACGGCCACCCACACTGGCCAGTTCGACTTCAACTGCTCGACCTGCGGCAAGGGCTTCCAGTGCAAGAGCTACTTGATCGTCCACCAGCGCGTCCACTCGGACCTCAAGCCCTACTCATGCACGACCTGCGGCCAGAACTTCAAGACGAAGCAGTCCCTGCTTGACCACGAAAACCGGCACATGGGCGTCAAGCCTTACACCTGCGAGATCTGCGGCCGGGGCTTCATCACCAAGGGACTCTGCAAGAGCCACCAGAAGATACACTCGGGCACCGACAACAGGCAGTACCCCTGCGTCATCTGCAACAAGATGTTCGTCAGCAAGAGTTACCTCAATACCCACCTCAGGATCCACACGGGCGAGAAGCCCTACTTGTGCGAGGTCTGCGGCAAAGGATTCCTCACGAGGGTCGACCTAAAGATCCACTCGACCATGCACACCGGTGAAAAGAGCTTCAAGTGCGACTTGTGCGGCAAGGTGTTTGCGAGGCGCTCGGCTCTGCGCTGCCACCGGCGCTCCCATACGGGCGAGCGGCCCTACAGGTGCGAGGTCTGCGGCAAGACCTTTACCCAGTTCAGTCCCATGGCTATCCATAAGAGGCTGCACACCGGCGAGAGACCCTACGAGTGCGACCTCTGCGGCAAGGCCTTCGTCTCAAGGTCGACGATGATGTGTCACAGGAAGAAGCACAACGTCCCGGAGCTGGGCGGCGGTCAGCACAAAACTACCAAGGACGAGCTCGTTCAGAAGGAGGTCGCTGCCTTCAGGGAAACTCAGGAGCCGGGCCTCTCCGTTGCCGACTGA
- Protein Sequence
- MSVVEEIDYLCRLCATKMGILMGLPIFEANEQMRNIDKKISACLPVQISITDQLPKIICEECAFKLDEFFDFREKVLQTEGIFIQMLKSITKEDINSLDSISINEIQGNMNRLTNSINEIQNSNIGRHNVQNRIHAISVIDNMGLSERQRVVTQDEMSREEADIEVTDFHLDGDTVRMVDEQMREVSNQEIAMHLEGDMAVSVENLTVGAHLSQLDINYVTSMASNSQAQKEMVHYCDEVKFDSVAPKELENSLGNCEAAGVRRRSFTSSRVESDIDDACDDHMSVAEASAHPFGLSSTSHVDASDNNDGIMVQYTKSSKNALLETALSNPTMDETETNWYICPFCNEAAAEPNSLAVHFEQHFCSCPNCELFFTSIDVLNLHSQDCLEGKSKSNDDLSEEQREPTSRSEKKQQGSRPKWTPKVCTHCGKQYRTNYKLQEHMRKHTGEKPFQCVLCEKAFRSKIGLAQHTATHTGQFDFNCSTCGKGFQCKSYLIVHQRVHSDLKPYSCTTCGQNFKTKQSLLDHENRHMGVKPYTCEICGRGFITKGLCKSHQKIHSGTDNRQYPCVICNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCDLCGKVFARRSALRCHRRSHTGERPYRCEVCGKTFTQFSPMAIHKRLHTGERPYECDLCGKAFVSRSTMMCHRKKHNVPELGGGQHKTTKDELVQKEVAAFRETQEPGLSVAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00708097;
- 90% Identity
- -
- 80% Identity
- -