Ekon016561.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eupristina koningsbergeri
Gene Symbol
-
Assembly
GCA_018907245.1
Location
JACCHV010000034.1:3186282-3189906[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00013 0.048 15.9 3.0 1 23 262 284 262 284 0.97
2 10 0.057 22 7.6 0.1 1 23 292 315 292 315 0.91
3 10 3.4e-05 0.013 17.7 0.4 2 23 498 519 497 519 0.97
4 10 9.7e-06 0.0036 19.5 2.7 1 23 524 547 524 547 0.96
5 10 1.4e-05 0.0054 18.9 0.1 1 23 580 602 580 602 0.98
6 10 5.1e-07 0.00019 23.5 0.8 1 23 612 634 612 634 0.96
7 10 1.9e-06 0.0007 21.7 1.2 1 23 640 662 640 662 0.99
8 10 9.5e-06 0.0035 19.5 0.2 1 23 668 690 668 690 0.98
9 10 4.9e-06 0.0018 20.4 2.6 1 23 696 718 696 718 0.98
10 10 0.00037 0.14 14.5 0.3 1 21 724 744 724 745 0.94

Sequence Information

Coding Sequence
ATGGAGGAGGTCAAGATCTACGGGGGTCGGCCCAACGGCGTCGTCCACGACGGTGATCTCCTGCTGGGTGCGGAGGTCGCGAGCGTCCTCGAGACCTGTCGGCTTTGCGTCAAGAGGTGCGGTCTTGACACGCAACACTGGGGCCTCTTCGAGAACGACCTGTCCCAGAAGCTTATGGCTTTCGCCGCCGTACAGATTCAGAAAAACGATGGGTTACCATCAATTATCTGCACTAATTGTCGAAATTTAGTTTACATGTCTTACAATTTCAAATGCCAGGTGGAAAGAAGTGATCATGATCTTCGCCAAGCTCTTCTTTTAAGACAATCAACATCACATTGGCCTTCAGTGCCTGTTGTAAAATCTGTTGATAATATAGATACGCTAGAAAGTATGGTACCTTGTTTGCAAAAGAATATCAATAATTCTTGTATATCTATTCAAGATGGACATGGTCAAAATAATCATGAACAATTTATTTTTGATATTGCAAATAGTTGTAATGTAGAGAGTGGAGCATGTAAAAAGCAAGAAATAAAGACTAATAACTCAGTTGAGACAGGAAATATTTCAGAAAATGACAATGACATGGCTTTTGAAATTAACTCCACAATTATAGACAATGTTAACCATCAAGATAATCTTATAGCCTTTGAGACTCAATATGATATTAAAAATGATTTGGCTATAAAAAATGATCCTGAAAAGGTAAAATATAAGCAAAATCTTGAAAATCCTAATCAAAGTGACGATGAAAAACCTTTAATATTAAGAGCAAAACGTCATAAATGTAATCATTGCATAAAATCATTTTCTAGTTTGTCTTTGTTAGAAAAACATGTAATAATTCACAAAAGGCATTTAGAAATAGTTTATATTTGTTATTTATGTGATGAGCCATTTTCTTCAATTAATAAAGTTCAAAGTCATGCAATGGCCATTCATGGAATGAATGTGGAAAAAGAAAAAGTAATAGAAAATAGCAAAATGCGACGAATAAATGGTTGGATTAAAAAAATTGATGATAATGTTTATGATCAAAATAGATCAGTAGTTGAAAATATAGAAGAAAAAAAAAATACTAAATTTGGATGTAAATTTTGTTGTAGACAATTTACTTATCATAAGCCTTTTATGGCTCATATTACAACACATCCTGAGTATAATAATAAATTATTAAATGAATTAAGTAAAGATCTAGTTATTTCTTCTGAATCAACTGTTAAAATTTCTTCCATTTCACAAAATATAATAGAAGCTTCTAATCAACTTAACTCAGAAATTGTATCTCAAACAACTAATTTAAAAGTTGAGTCTTATTCACCCAATGAAGAGCTTTCTTCTCAAACAACAAATTTAGAAATAATATCTGAAGAAAATAAATGCACAGAGACAGATATATCTTATAGGGATGACACAGATGAATCTCAAGGTGAAGATTATGAAGATGATGGTCAATGTGAAAATGATGACATGCCTGTTGCAAGTATACAATGCAATCAGTGTGGTAAACTTGTTGCTACTCTAAGAAATTTAAAAAGGCATCTTTTAACTCATTCTGGCCTTAAACATAAATGTTCAGTATGCAATAAAGATTTTTCAAGACCTGATAAACTTCGAGAGCATCAGCAGTTAAAACATAAAGAAGAACTATTTGGTAAATCTGATTCAGAAAATGAATCATCAGATGACAATAATATGTCAATTAATAGGAAAAAGGATAAAAGCAATCGCCCTTATAAATGCTCACTATGTCCTAAAGCATTTGCTCAACCCCAATCATTGGCAAATCATGAAGAGAGACATAAACGTGTTCGTGATGTACAAAAACGTTACTTGTGTGAAGTATGTAGTAAATGCTTTGCTCAAAGTGGATCATTAGTTGCTCATATGCGTACTCATACAGGTGTAAAGCCCTATGTTTGTAATGTTTGTAGTAGAGCTTTCACTAAAAGCACTTATCTGCAGCTACATCTTCGAACGCATAGCGGAGAAAAACCATACATTTGCCAATATTGTAGCCGAGCCTTTGCTCGTGCAAATACTTTAGCCAGACATATAACTATGCATACAGGAGAAGCCAAGTATCAATGCCAAATCTGTACAAAGTCTTTTAGACGATTAACATCTTTAAATGAGCACACATACACACATACAGGTCAAAGACCTTATGCTTGTAAAATTTGTTCAAAAAGGTATAACAATGCTGGGTCATTATATGCTCACACAAAAAAATGTAAAGCCATGCAAGTTGCTGCTGCAAATCAAACAAATTACCCAGTTTCTTTACATCCGACTGATAATAATAGTATAGTAGTACAAAGTGATAATAATACTGCACCACAACTCTTAATTTTTACTGAGAAAAAAATTGATGAGATGATTACAGATGAGACAATAGCATCTGAATCTCAAACTTGTCAATTCATGATTACAAATGTACATGGTCAAAAACCATTACAGCCAAATATGCTGGAGTCATATACAATACAGGAATCAGATATTTATAATATAAACTCAAAACAATTTAAGACATCGTACTATGGATTGTATCAAAATATGTGA
Protein Sequence
MEEVKIYGGRPNGVVHDGDLLLGAEVASVLETCRLCVKRCGLDTQHWGLFENDLSQKLMAFAAVQIQKNDGLPSIICTNCRNLVYMSYNFKCQVERSDHDLRQALLLRQSTSHWPSVPVVKSVDNIDTLESMVPCLQKNINNSCISIQDGHGQNNHEQFIFDIANSCNVESGACKKQEIKTNNSVETGNISENDNDMAFEINSTIIDNVNHQDNLIAFETQYDIKNDLAIKNDPEKVKYKQNLENPNQSDDEKPLILRAKRHKCNHCIKSFSSLSLLEKHVIIHKRHLEIVYICYLCDEPFSSINKVQSHAMAIHGMNVEKEKVIENSKMRRINGWIKKIDDNVYDQNRSVVENIEEKKNTKFGCKFCCRQFTYHKPFMAHITTHPEYNNKLLNELSKDLVISSESTVKISSISQNIIEASNQLNSEIVSQTTNLKVESYSPNEELSSQTTNLEIISEENKCTETDISYRDDTDESQGEDYEDDGQCENDDMPVASIQCNQCGKLVATLRNLKRHLLTHSGLKHKCSVCNKDFSRPDKLREHQQLKHKEELFGKSDSENESSDDNNMSINRKKDKSNRPYKCSLCPKAFAQPQSLANHEERHKRVRDVQKRYLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYQCQICTKSFRRLTSLNEHTYTHTGQRPYACKICSKRYNNAGSLYAHTKKCKAMQVAAANQTNYPVSLHPTDNNSIVVQSDNNTAPQLLIFTEKKIDEMITDETIASESQTCQFMITNVHGQKPLQPNMLESYTIQESDIYNINSKQFKTSYYGLYQNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00708670;
90% Identity
-
80% Identity
-