Equa029893.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Euplagia quadripunctaria
Gene Symbol
-
Assembly
GCA_963859945.1
Location
OY982586.1:5716382-5717476[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.75 75 5.0 4.5 1 23 39 62 39 62 0.94
2 10 1.7 1.7e+02 3.9 0.4 2 22 88 108 87 110 0.84
3 10 0.028 2.8 9.5 2.9 2 23 133 155 132 155 0.93
4 10 0.00096 0.096 14.1 0.0 1 23 161 184 161 184 0.94
5 10 1.7e-06 0.00017 22.8 0.4 2 23 190 212 190 212 0.96
6 10 0.00044 0.044 15.2 0.4 2 23 218 240 217 240 0.93
7 10 0.00098 0.098 14.1 1.0 1 23 247 270 247 270 0.96
8 10 0.00024 0.024 16.0 0.3 3 23 278 298 277 298 0.94
9 10 3.4e-05 0.0034 18.7 3.2 1 23 304 326 304 326 0.99
10 10 3.1e-06 0.00031 22.0 1.0 1 23 332 354 332 355 0.95

Sequence Information

Coding Sequence
ATGATAGCAGACGAAAGGTACGCAGAAAAACAACGCAAGGATGATCTGACGAGACTGATCACCATTGTACTGGAGAATTCCAACATCATGCCGTTCCGCTGGGCAGCCAACAAGTACATGTGTTTCTTTTGTTGCTGCACCTTCGTTGACAGTGTGCAGCTCAAGGAACATACCATGGAAGAACACAAAGATGCCAAATTGAGAAGAGTTTTGAGGACATTGCTTGGTAGCAGTCGGGTCAAGTTAGATACTTCGGAAATCACATGCAAAAGGTGTTTGAAACAGTTCGAGAATTTCGACGTCTTTCTCGATCACGTTTACGAAATCCacgatttaaaattcaataaagaTATCGCAAGGTGTCTCTTCACTTTCAACCTGTCGGATGAAGGCATGTCTTGTCACGAATGTGGACAAGAATTTAGATTCTTTGGACCATTACTCAAACATGCTCACAAGTTTCACAATAAATATAAGACGTTCCTTTGTGAAATATGTGGTCAAGGATTTGTCGCGAAAGCTAACGTAGaaagtcacattaaaaatgttcataGTTTGAAAGATCGACAATGTCAGAAATGTGATAAAGTGTTTAGGAATCCGTATGCTCTGCAGGTACACCGTGAAAGAGCCCATAGAATTGAGTCTTTGAAGTGCCCAAAATGCCCTGAATTTTTTGCATCGAAGTATCTCAAGAAACGTCATCTAGCGTTAGTGCATGATGTCAAAAAACTTCAGTTCAGTTGTGATGAATGTGAACGAGTTTACACAATGAAAAGTAGATTGGTCCAGCATAAATTGAGAACGCATTTAAAGCAAAAGACTGTAGCTTGTGAGATTTGTGGCTTTAAAGTGTTTAACAATGATCTACTGAAGCGGCACATGGTTCGCCATGATGATTCCAGACCATTCCAGTGTGAATTCTGCAAGAAAAGTTTTCAGAGGAAAAAGACTTTGGACGTTCATACAAGAATACATACAAATGATAGGAGGTATGCGTGTAAGGAGTGTGGGAGGGCGTTTGTTCAAGTTACCAGTTATAAGCTACATATGCGAGTGCATCACGGAGGGAATGAGGGATCTTCTTGGAACtga
Protein Sequence
MIADERYAEKQRKDDLTRLITIVLENSNIMPFRWAANKYMCFFCCCTFVDSVQLKEHTMEEHKDAKLRRVLRTLLGSSRVKLDTSEITCKRCLKQFENFDVFLDHVYEIHDLKFNKDIARCLFTFNLSDEGMSCHECGQEFRFFGPLLKHAHKFHNKYKTFLCEICGQGFVAKANVESHIKNVHSLKDRQCQKCDKVFRNPYALQVHRERAHRIESLKCPKCPEFFASKYLKKRHLALVHDVKKLQFSCDECERVYTMKSRLVQHKLRTHLKQKTVACEICGFKVFNNDLLKRHMVRHDDSRPFQCEFCKKSFQRKKTLDVHTRIHTNDRRYACKECGRAFVQVTSYKLHMRVHHGGNEGSSWN