Evul025499.1
Basic Information
- Insect
- Eupithecia vulgata
- Gene Symbol
- -
- Assembly
- GCA_946478135.1
- Location
- CAMLCK010000204.1:200689-213880[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.2e-05 0.0024 18.9 1.6 2 23 149 170 149 170 0.96 2 15 4e-06 0.0003 21.8 0.1 3 23 203 225 202 225 0.91 3 15 2.9e-06 0.00022 22.2 0.4 1 23 231 253 231 253 0.98 4 15 0.45 34 5.8 0.0 1 14 259 272 259 280 0.78 5 15 0.0025 0.19 12.9 1.8 2 23 289 312 288 312 0.91 6 15 0.00095 0.071 14.3 1.7 1 23 318 341 318 341 0.95 7 15 0.018 1.3 10.3 0.5 6 23 362 380 360 380 0.95 8 15 0.018 1.3 10.3 0.5 6 23 401 419 399 419 0.95 9 15 0.22 16 6.9 3.3 6 23 440 458 438 458 0.95 10 15 0.22 16 6.9 3.3 6 23 479 497 477 497 0.95 11 15 0.22 16 6.9 3.3 6 23 518 536 516 536 0.95 12 15 0.027 2 9.7 1.5 6 23 557 575 555 575 0.95 13 15 0.22 16 6.9 3.3 6 23 596 614 594 614 0.95 14 15 0.018 1.3 10.3 0.5 6 23 635 653 633 653 0.95 15 15 0.22 16 6.9 3.3 6 23 674 692 672 692 0.95
Sequence Information
- Coding Sequence
- ATGGATGAAAACAACGTAGAAAACATCTGCCGCGTATGTCTCAACGTACAAGAGACTGTATTCTCGCTGTACCGCGCGCGGCTCGGCTCATCTCCTTTCGAGAAGCTTGCCCGTCGCACGCCTCTGCGGGTGCGACTGCACGACGCCGGGCCGACTTCCATCTGCTCGCAGTGCCTCATCGACCTCGATACCACCGTCGCCTTCCTCGACCGCTGCGACCGCTCCAACCGGTTGCTGACCGAGACACTTGCTCAAGGCTTCGACGACGATACTTCCGACGGCAAAGAGTCAGAACCCTTGCCAGAATCAGAGAACAAACCGCCTGAGGCAGTGGAAGTGGTAGTGAAGGAGGATGAGCCAAGGTCCGTAGGTCTGGCAGAGGAGCGGTGCGGGGAATGCGGGGCGCGGCGCCGCTGCGCGCACTGGGCGCCGCCCGCGCTGCGTGTCTGTCCCTTTTGTCAGAAGACGTTCAAGAAGAAGTACAACTACCAGATacatgtCAAGCTGCACCTTGGTGAGAGTGAGTACTCGTGCTCAGTCTGTGGAGCAGGCCAGCTGAGCCGCTGGGGCGCGGCGCGGCACTGCCGAGCTGCAGCCCGCCGCGTCTGCCCTGTGCCAGCCTGCGGCCGGAGCTTCACCACCGCCACCAACCTACAGACTCATATCAGGAAGCATAGCGGGGAGAGACCATTCGAATGTGACGACTGCGGCAAGCGGTTCATCAGcaagaacatcctgaacaaccACATGAGGATACATACAGGAGTAAAGCCGTACATGTGCCAGGTGTGCGGCGTGCAGTTCGCGACCAACAAGCTGGCGGCGCACCTCGCCGCGCACGTCGCGCCCCCCGCACGCCCACACGCCTGCGCGCGCGCGCACTGCACGCGCGCTTTCAGGACTGCACGGGATCTAAGGCAGCACGCGCGCGCGCACCAGTCGGAGCGGCAGTACCTGTGCGCCGTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCAACCAACACGTGCGGAGCGCGCACGGGATCAACAAGGTAACGACTCTACTGACTACGACACAGAGTCTACATTCTATTGCTCTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCAACCAACACGTGCGGAGCGCGCACGGGATCAACAAGGTAACGACTCTACTGACTACGACACAGAGTCTACATTCTATTGCTCTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCAACCAACACGTGCGGAGCGCGCACGGGATCAACAAGGTAACGACTCTACTGACTACGACACAGAGTCTACATTCTATTGCTCTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCCACCACCACGTGCGGAGCGCGCACGGGATCAAAAAGGTAACGACTCTACCGACTACGACACAGAGTCCACATTCTATTGCTCTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCCACCACCACGTGCGGAGCGCGCACGGGATCAACAAGGTAACGACTCTACCGACTACGACACAGAGTCTACATTCTATTGCTCTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCCACCACCACGTGCGGAGCGCGCACGGGATCAACAAGGTAACGACTCTACGGACTACGACACAGAGTCTACATTCTATTGCTCTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCAACCACCACGTGCGGAGCGCGCACGGGATCAACAAGGTAACGACTCTACGGACTACGACACAGAGTCTACATTCTATTGCTCTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCCACCACCACGTGCGGAGCGCGCACGGGATCAACAAGGTAACGACTCTACGGACTACGACACAGAGTCTACATTCTATTGCTCTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCAACCAACACGTGCGGAGCGCGCACGGGATCAACAAGGTAACGACTCTACCGACTACGACACAGAGTCTACATTCTATTGCTCTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCCACCACCACGTGCGGAGCGCGCACGGGATCAACAAGAAAAACACCGTTCGACGGGACGCAGACTCCACCATTGAACAAGTCGTTGACAATGACAAGACCTATTAG
- Protein Sequence
- MDENNVENICRVCLNVQETVFSLYRARLGSSPFEKLARRTPLRVRLHDAGPTSICSQCLIDLDTTVAFLDRCDRSNRLLTETLAQGFDDDTSDGKESEPLPESENKPPEAVEVVVKEDEPRSVGLAEERCGECGARRRCAHWAPPALRVCPFCQKTFKKKYNYQIHVKLHLGESEYSCSVCGAGQLSRWGAARHCRAAARRVCPVPACGRSFTTATNLQTHIRKHSGERPFECDDCGKRFISKNILNNHMRIHTGVKPYMCQVCGVQFATNKLAAHLAAHVAPPARPHACARAHCTRAFRTARDLRQHARAHQSERQYLCAVCDCSYKYKQSLNQHVRSAHGINKVTTLLTTTQSLHSIALCDCSYKYKQSLNQHVRSAHGINKVTTLLTTTQSLHSIALCDCSYKYKQSLNQHVRSAHGINKVTTLLTTTQSLHSIALCDCSYKYKQSLHHHVRSAHGIKKVTTLPTTTQSPHSIALCDCSYKYKQSLHHHVRSAHGINKVTTLPTTTQSLHSIALCDCSYKYKQSLHHHVRSAHGINKVTTLRTTTQSLHSIALCDCSYKYKQSLNHHVRSAHGINKVTTLRTTTQSLHSIALCDCSYKYKQSLHHHVRSAHGINKVTTLRTTTQSLHSIALCDCSYKYKQSLNQHVRSAHGINKVTTLPTTTQSLHSIALCDCSYKYKQSLHHHVRSAHGINKKNTVRRDADSTIEQVVDNDKTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00705374;
- 90% Identity
- iTF_00705374;
- 80% Identity
- -