Etri018161.1
Basic Information
- Insect
- Eupithecia tripunctaria
- Gene Symbol
- -
- Assembly
- GCA_955876795.1
- Location
- OY041612.1:16053104-16066231[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.1e-05 0.0027 19.0 1.3 2 23 150 171 150 171 0.96 2 13 1.3e-06 0.00011 23.3 0.2 3 23 204 226 203 226 0.95 3 13 2.6e-06 0.00022 22.4 0.4 1 23 232 254 232 254 0.98 4 13 0.44 38 5.9 0.0 1 14 260 273 260 281 0.78 5 13 0.00074 0.063 14.7 1.1 2 23 290 313 289 313 0.91 6 13 0.0022 0.19 13.1 3.5 1 23 319 342 319 342 0.95 7 13 0.024 2.1 9.9 1.5 6 23 363 381 361 381 0.95 8 13 0.024 2.1 9.9 1.5 6 23 402 420 400 420 0.95 9 13 0.024 2.1 9.9 1.5 6 23 441 459 439 459 0.95 10 13 0.024 2.1 9.9 1.5 6 23 480 498 478 498 0.95 11 13 0.024 2.1 9.9 1.5 6 23 519 537 517 537 0.95 12 13 0.024 2.1 9.9 1.5 6 23 558 576 556 576 0.95 13 13 0.024 2.1 9.9 1.5 6 23 597 615 595 615 0.95
Sequence Information
- Coding Sequence
- ATGGATCAAAGCATCGTAGAAAACATTTGTCGCGTGTGCCTGAACGTACAAGACACTGTATTCTCGCTGTACCGCGCGCGGCACGGCTCTTCTCCGTACGAGAAGCTGGCGCGCCGCACGCCGCTGCGAGTGCGCCTGCACGATGCCGGGCCGGCGTCCATCTGCTCTCAGTGCCTCATCGACCTCGACTCCACCGTCGCCTTCCTCGACCGCTGCGACCGCTCCAACCAGCTGCTAGCCGAGAGATTTGCTCAAGGCATAGACGACGATACTTCCAACGGCAAAGCTGAGGCAGAACCCTCGCCGGAGCCAGAGAGCAAGCCGCCTGAGGCAGTGGAAGTGATCACCAGAGAGGAAGAGCCCGAGTCTGTGGCTCTGGAGGAGGAGCGGTGCGAGGAGTGCGGGGCGCGGCGCCGCTGCGCGCACTGGGCGCCGCCCGCGCAGCGCGTATGTCCCTTCTGTCAAAAGACGTTCAAGAAGAAGTACAACTACCAGATACATGTCAATCTTCACCTAGGTGAGAGTAATTTCTCGTGCTCCGTGTGTGGAGCGGGCCAGCTGAGCCGCTGGGGCGCGACGCGGCACTgccgggcggcggcgcgccgcgcCTGCCCCGTGCCCGGCTGCGGCCGCTCCTTCACCACCACCACCAACCTGCAGACTCATATAAGGAAGCATAACGGGGAGAGACCATTCGAATGTGACGACTGCGGCAAGCGGTTCATCAGCAAGAACATACTGAACAACCACATGAGGATACACACGGGAGTAAAGCCGTACATGTGCCAGGTGTGCGGCGCGCAGTTCGCGACCAACAAGCTGGCGGCGCACCTGGCCGcgcacgccgcgccgccggcgcGCCCGCACGCCTGCGCGCGCGCGCACTGCCCGCGCGCCTTCAGGACTGCACGGGACCTAAGGCAGCACGCGCGCGCGCACCAGTCGGAGCGGCAGTACCTGTGCGCAGTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCAACCACCACGTGCGGAGCGCGCACGGGATCAACAAGGTAACGACTCTACCGTCTACGACACAGAGTCTACATTCTATTGCTCTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCAACCACCACGTGCGGAGCGCGCACGGGATCAACAAGGTAACGACTCTACCGTCTACGACACAGAGTCTACATTCTATTGCTCTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCAACCACCACGTGCGGAGCGCGCACGGGATCAACAAGGTAACGACTCTACCGTCTACGACACAGAGTCTACATTCTATTGCTCTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCAACCACCACGTGCGGAGCGCGCACGGGATCAACAAGGTAACGACTCTACCGTCTACGACACAGAGTCTACATTCTATTGCTCTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCAACCACCACGTGCGGAGCGCGCACGGGATCAACAAGGTAACGACTCTACCGTCTACGACACAGAGTCTACATTCTATTGCTCTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCAACCACCACGTGCGGAGCGCGCACGGGATCAACAAGGTAACGACTCTACCGTCTACGACACAGAGTCTACATTCTATTGCTCTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCAACCACCACGTGCGGAGCGCGCACGGGATCAACAAGGTAACGACTCTACCGTCTACGACACAGAGTCTACATTCTATTGCTCTGTGCGACTGCAGCTACAAGTACAAGCAGTCGCTCAACCACCACGTGCGGAGCGCGCACGGGATCAACAAGGTAACGACTCTACCGTCTACGACACAGAGTCTACATTCTATTGCTCTATGA
- Protein Sequence
- MDQSIVENICRVCLNVQDTVFSLYRARHGSSPYEKLARRTPLRVRLHDAGPASICSQCLIDLDSTVAFLDRCDRSNQLLAERFAQGIDDDTSNGKAEAEPSPEPESKPPEAVEVITREEEPESVALEEERCEECGARRRCAHWAPPAQRVCPFCQKTFKKKYNYQIHVNLHLGESNFSCSVCGAGQLSRWGATRHCRAAARRACPVPGCGRSFTTTTNLQTHIRKHNGERPFECDDCGKRFISKNILNNHMRIHTGVKPYMCQVCGAQFATNKLAAHLAAHAAPPARPHACARAHCPRAFRTARDLRQHARAHQSERQYLCAVCDCSYKYKQSLNHHVRSAHGINKVTTLPSTTQSLHSIALCDCSYKYKQSLNHHVRSAHGINKVTTLPSTTQSLHSIALCDCSYKYKQSLNHHVRSAHGINKVTTLPSTTQSLHSIALCDCSYKYKQSLNHHVRSAHGINKVTTLPSTTQSLHSIALCDCSYKYKQSLNHHVRSAHGINKVTTLPSTTQSLHSIALCDCSYKYKQSLNHHVRSAHGINKVTTLPSTTQSLHSIALCDCSYKYKQSLNHHVRSAHGINKVTTLPSTTQSLHSIALCDCSYKYKQSLNHHVRSAHGINKVTTLPSTTQSLHSIAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00706348;
- 90% Identity
- iTF_00706348;
- 80% Identity
- -