Etri029203.1
Basic Information
- Insect
- Eupithecia tripunctaria
- Gene Symbol
- -
- Assembly
- GCA_955876795.1
- Location
- OY041626.1:6369368-6406903[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.18 16 7.1 0.0 1 23 466 489 466 489 0.92 2 13 1.2 1e+02 4.5 2.9 2 21 572 591 571 592 0.93 3 13 0.069 5.8 8.5 4.3 2 23 646 667 645 667 0.95 4 13 0.19 16 7.1 2.6 1 23 678 701 678 701 0.92 5 13 0.00052 0.044 15.1 0.6 2 23 708 731 707 731 0.97 6 13 0.089 7.6 8.1 0.2 1 23 737 759 737 759 0.93 7 13 0.011 0.95 10.9 1.8 1 23 765 787 765 787 0.98 8 13 1.1 95 4.7 0.0 2 19 798 815 798 818 0.89 9 13 0.45 38 5.9 0.1 1 23 896 918 896 918 0.96 10 13 0.0018 0.15 13.5 1.8 1 23 1159 1182 1159 1182 0.95 11 13 0.004 0.34 12.3 1.8 1 23 1189 1212 1189 1212 0.96 12 13 0.0049 0.42 12.1 0.2 2 23 1230 1252 1229 1252 0.96 13 13 0.0012 0.1 14.0 1.0 3 23 1294 1315 1292 1315 0.95
Sequence Information
- Coding Sequence
- ATGGATATGCCTCTAAAGAGTAGATCCGTACTAGGCTACGACATCGACTTATCTTTAATCACAAAGAACCAACCAGTAGAAATGACAGCGAATGTCTACCAATTTCTAGTAAATCTAGAACTTACTGAAGAAGGCATACCACAAAACTACGATAGACCTGTAGACGCAAGCAACCAACCGATTGTTTTAGACGAAAACCAACTTTACGTACTAGATGATGGAACACAGATTAGAGCTTCGCAAATACACTTCGACAATGAAGATGCTCCTATGGATCTATCGCTGGAACAACTCCCTTTCGTAAAAACCAATGACGATGTTGAAAATATACCAACTGATGATGTTCAAAATATACCAACTGATGAAATTTTCGATGATATTATACACAAAATCATAGCTAGCCCTGTACCTTTAACTAACTCCAGCCCTAAACATGGTTTCATAAACCACGTACCTTTTAAACTAGTATGCAACAACACTATCGGATTCGAAGCTCAATTCACAAAATATTTAGAAGCTAGTAACAAAACTTACGCTACACTCAGCAATGTAACTAAAAAGAATAAATCTCCAAGGAGTTTGATTAGAGACAACTTCAATGATAAAGAAGAATTTAAATTCACACGCGATGAGATACTGAATATGCTCAAAGATTCACCAGTTACAAGTATACCATATGAGAATAATGAGAAAAAACATGTGAGGAAGACAGATCCGACTAAAATGGCCCAAAAGACAAGCACTAAAGCTATCGATATAGAAGGGCTAGTTATAGGCAATGGAGGGAACAGAAACTGCTTCATATGCGGTACGAATGTCAGCAACGACAAAATATATCTCTTTGATAAAGAAgatcaaaaaatacataaatgttcGCCACAAAAGAAAATGTCAACtcaactgaaaataatatgtgaGAATTGCCTAAATGATAACTTCAGGCCATCTAGGATGAAAAACGCAAATCAACTCCTCAATTCGGAAGAATATTTGGTAATAAGGAATAACCAGCAATACATATTTCAAAAGACGAAGAACTTTAAATTCCGAACGGATACCATAAACAAAACGAAGATGAGTAAAAAGGACGAGTTTGTGAAGTTCGATATCGGTTCTGATGGTGAGATCGTTACGAAACCAGTCGATGATGAGGTCATTCTGGTACACGATGGCAGAAGGGGTAGTTCCAGTGATGTAGAGGTTATAGAGGAAGTGGATAAGATCATAGACAATTTGGAGGAAGCGGACGAGGAAGTCAAGGTGTTCTTAGGGAAATATGACTGCGATGAAGTAAATGAGCTAAAATGCAGgTTCTGTGAGCAAATATTTTCGGCTGTATCAGAAGTGATAGAACATGGAGAGTTGCACAAGCACGACATAGATGACGATGTTGTTTTTCCTTGTCCTTTGTGTGACTTCGGCTACGCTAGCTTCCAATGGCTGAGGGGTCACTTGATAGCAGCGCATGACAAGAAAGCAAACAAAGCTAAAGAATCTCAGAAAGgtgTAGAGAGATACAGCGTCGCGCAGAATTCGAATGAATCGGTCCACCCAGATTTAATAATGAAGACAGAAGTTAAACAAGAAGCGATAAGCAGTGACGATGAGATTTGGATAGTGCAAACCGGCGATGATGAGTCAACAGGACCTCTGAAAGACATTCTAGAAGCTGCAAAGTCTGCCAAGgttAATACGAGTGACAATAAAACCAAGAAATGCCATACCTGTGGcAATAACTACCCATCGATAGAATCTCTGACTTCTCACAAATGTCGGGGGAAAAGACGTAAAACTAGCGAAGATGCAATGATAATACCAACAGAAGAAGATTTTATTCGGAGGGCTCAAGGAAAACCGCGGCACTTAACTTCCACCAATGCTGAGCTTATAGAGAAACACAAGAAGTCTAGAAACCTATCGGAACCTCAAATCGTGACATGTCACAACTGTAATCAATCGTTCACGTCTAAAGTGCGCCTTAAATTTCACATGCAATTCCACGACATGACCTCAATGTTAACCGATGGTCAGTACAAGTGCTTGCAATGCGACGATATGTTTACAACGGAGACACAACTGTTTGATCATGTACACTTCACGCATGAGAAGATACGAAGATGGCAGTGTCCTGTACAGGGATGTCAGAAGACTTTCTATTTGAGGGCAACACTAACTAAGCACAGTCGAACGCACACAGACACCCGTCGCTATGTGTGCGTGACGTGTGGTAAACGCTTCCTGGATAAACAGACGTTGGACGAGCACGGCGTTACGCATTTACAGatCAAACCATACCAATGCCACATCTGCCTGAAACAACTTACCCGCGTGTCTCGTTTGCGCATGCATGTTCGCGCGCACGAAGAGGAATTATCACCGACGTTGTTGCCCGTCTGCAGAGTCTGTCGCCGGGCGTTCAGAGATGCCGGAGAGGCGCAGGAACACGCAACAAAATCCTCGGACTGTATCGAAGCGATTTCTGGTGAAGTGAAGACAGAGGAAGAAACGGCTGTACAGCTGTCGCCCACCAGTGGTATAGTGCGGCAAACAATACAAGTTATTCAGTGCCCCTCCCCCAAAACCCGAGTGCCACGTCAAGTATCCTCGCCCGTAGCAGCCCCCCTTCTATCGTTGTTGACCAGCGATGCCCTACCACTTATAAGAGTGGTCGAGATCGAAAAGGCTTTTAGATGTGAATATTGTGAAGATGTTTTCTACATAGAAGAAGGTCTGAATGATCACAGGGCGATCCACAAGGGCGTCAAGAATCCATTCACGTGCCACATCTGCAAAGTTAGCTTTGCTGCTTATTCCAGATGCACAACCCACAAGACCACTCATGGTTTCTACAAGCGACCGGCGGCCGGCAATGACCAAGCTACGGGCGTCGTTGGTTATGGCGACTTTCCAACTGTCAAACACTTCTTGTGCGAGGTTAGTGACCAATCCAACAGATGCACAACCCACAAGACCACTCATGGTTTCTACAAGCGACCGGCGGTCGGCAATGACCAAGCTACGGGCGTCGTTGGTTATGGCGACTTTCCAACTGTCAAACACTTCTTGTGCGAGGTTAGTGACCAATGCAACAGATGCACAACCCACAAGACCACTCACGGTTTCTACAAGCGACCGGCGGCCGGCAATGACCAAGCTACGGGCGTCGTTGGTTATGGCGACTTTCCAACTGTCAAACACTTCTTGTGCGAGGTTAGTGACCAATCCAACAGATGCACAACCCACAAGACCACTCATGGTTTCTACAAGCGACCGGCGGCCGGCAATGACCAAGCTACGGGCGTCGTTGGTTATGGCGACTTTCCAACTGTCAAACACTTCTTGTGCGAGGTTAGTGACCAATCCAACAGATGCACAACCCACAAGACCACTCACGGTTTCTACAAACGACCGGCGGCCGGCAATGACCAAGCTACGGGCGTCGTTGGTTATGGCGACTTTCCAACTGTCAAACACTTCTTGTGCGAGGACTGCGGAAGGTCGTATTTGCATTGGACGTACTTACAAGTGCACAGAAGGATGAAACATCCCAATGAAAACTACCCTCATAACTGTAATCAGTGTGAAATGACGTTCCCTAACAgttggAGCTTAGCTTACCACAGAAAGAAACTTCACAGCAAAACCAGCCAAGAAGAGGTTACGAAAACAAGCGTTAACTACAGgATACCTTGCCGTGATTGCGACGAGGTCCTGCCAAACAAAACTGCTCTCTATAAGCATAGGAAGAAGGAGCACATTGGCGTGTCCACGAGCGCTAATACTAGCGCTGCCGCCGCTGTCTCAGCTTACAATAGCCAGGTTAAGAGAACTGCCATGTCAGTGCGCAGTAAGCTGGTATCATGCGGCCGCACCTGGGCCTGCACGCGCTGCCCCAAGCGTTTCCGGATCCGGTCCGAGCTGCGCTTGCATACTAGGCTTAAGCACCCGGCTTTCATCGCTGTATTAGAgGTGCAAGGTCGAAATCTGAGTGCTGAAGAGGCAGTCAGCATCATAAATTCTAACAACATCAGCCAAGACAGAATCATTGAGATCAGTGTCATGTCTTTTGCAAAGGGTGCCTCAAGCATAGTGCCGAACTGCGCCCGCGCACTTTCCCTGCTGGGGAACGTACCACGGACACAGATCATGGTCTCTCGGACTCCGAATGATATGCATTGCTTTGTGAATCCAATGTCTTTCCAAAGATGCGTCGTACCGAACGTAAGGAGACCTACCATCTTACGCGCTGAACACCAAAACATGATCGAAGGAAACCAGGTAATTAATGAACCATCGAAAAGCTAA
- Protein Sequence
- MDMPLKSRSVLGYDIDLSLITKNQPVEMTANVYQFLVNLELTEEGIPQNYDRPVDASNQPIVLDENQLYVLDDGTQIRASQIHFDNEDAPMDLSLEQLPFVKTNDDVENIPTDDVQNIPTDEIFDDIIHKIIASPVPLTNSSPKHGFINHVPFKLVCNNTIGFEAQFTKYLEASNKTYATLSNVTKKNKSPRSLIRDNFNDKEEFKFTRDEILNMLKDSPVTSIPYENNEKKHVRKTDPTKMAQKTSTKAIDIEGLVIGNGGNRNCFICGTNVSNDKIYLFDKEDQKIHKCSPQKKMSTQLKIICENCLNDNFRPSRMKNANQLLNSEEYLVIRNNQQYIFQKTKNFKFRTDTINKTKMSKKDEFVKFDIGSDGEIVTKPVDDEVILVHDGRRGSSSDVEVIEEVDKIIDNLEEADEEVKVFLGKYDCDEVNELKCRFCEQIFSAVSEVIEHGELHKHDIDDDVVFPCPLCDFGYASFQWLRGHLIAAHDKKANKAKESQKGVERYSVAQNSNESVHPDLIMKTEVKQEAISSDDEIWIVQTGDDESTGPLKDILEAAKSAKVNTSDNKTKKCHTCGNNYPSIESLTSHKCRGKRRKTSEDAMIIPTEEDFIRRAQGKPRHLTSTNAELIEKHKKSRNLSEPQIVTCHNCNQSFTSKVRLKFHMQFHDMTSMLTDGQYKCLQCDDMFTTETQLFDHVHFTHEKIRRWQCPVQGCQKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPYQCHICLKQLTRVSRLRMHVRAHEEELSPTLLPVCRVCRRAFRDAGEAQEHATKSSDCIEAISGEVKTEEETAVQLSPTSGIVRQTIQVIQCPSPKTRVPRQVSSPVAAPLLSLLTSDALPLIRVVEIEKAFRCEYCEDVFYIEEGLNDHRAIHKGVKNPFTCHICKVSFAAYSRCTTHKTTHGFYKRPAAGNDQATGVVGYGDFPTVKHFLCEVSDQSNRCTTHKTTHGFYKRPAVGNDQATGVVGYGDFPTVKHFLCEVSDQCNRCTTHKTTHGFYKRPAAGNDQATGVVGYGDFPTVKHFLCEVSDQSNRCTTHKTTHGFYKRPAAGNDQATGVVGYGDFPTVKHFLCEVSDQSNRCTTHKTTHGFYKRPAAGNDQATGVVGYGDFPTVKHFLCEDCGRSYLHWTYLQVHRRMKHPNENYPHNCNQCEMTFPNSWSLAYHRKKLHSKTSQEEVTKTSVNYRIPCRDCDEVLPNKTALYKHRKKEHIGVSTSANTSAAAAVSAYNSQVKRTAMSVRSKLVSCGRTWACTRCPKRFRIRSELRLHTRLKHPAFIAVLEVQGRNLSAEEAVSIINSNNISQDRIIEISVMSFAKGASSIVPNCARALSLLGNVPRTQIMVSRTPNDMHCFVNPMSFQRCVVPNVRRPTILRAEHQNMIEGNQVINEPSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00696871;
- 90% Identity
- -
- 80% Identity
- -