Etri028358.1
Basic Information
- Insect
- Eupithecia tripunctaria
- Gene Symbol
- -
- Assembly
- GCA_955876795.1
- Location
- OY041625.1:1015908-1019937[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.64 55 5.4 2.1 1 23 246 269 246 269 0.92 2 17 0.019 1.6 10.2 3.0 1 23 274 297 274 297 0.95 3 17 0.91 77 4.9 3.2 1 19 327 345 327 350 0.89 4 17 0.00038 0.032 15.6 1.2 2 23 411 433 410 433 0.96 5 17 0.00059 0.05 15.0 2.9 1 23 439 462 439 462 0.95 6 17 0.00076 0.065 14.6 0.9 2 20 466 484 465 486 0.94 7 17 0.007 0.6 11.6 0.8 1 23 494 517 494 517 0.96 8 17 0.001 0.085 14.2 1.3 1 23 522 545 522 545 0.96 9 17 0.0028 0.24 12.8 0.2 2 23 558 579 557 579 0.96 10 17 0.034 2.9 9.4 1.6 1 23 585 607 585 607 0.97 11 17 3.7 3.1e+02 3.0 0.1 3 13 614 624 612 629 0.84 12 17 3.3e-06 0.00028 22.0 0.3 3 23 645 665 644 665 0.98 13 17 3.5 2.9e+02 3.1 0.2 3 23 671 691 669 691 0.88 14 17 2.5 2.1e+02 3.6 1.9 2 23 707 729 706 729 0.93 15 17 6.2e-06 0.00053 21.2 2.8 1 23 735 757 735 757 0.99 16 17 0.00043 0.037 15.4 6.5 2 23 764 785 763 785 0.96 17 17 0.017 1.4 10.4 3.4 1 23 791 814 791 815 0.95
Sequence Information
- Coding Sequence
- ATGGAGGCACCAACTAAGAGAAGCCTTGAAGAGCAGACAAACATAGAGTGGTTAAATCAGCACTTGAGGACAATTTTTCATTCTACTCAGTTCTGTTCCTTGTGCCTCAAAACCGATGGAGAGTTCTACTCACTTGACAAAATGTTTGCAGCCAATGAAGAGATCACTATGAGGCCGTTGCGAGATGTAGTCaactatgtttttaattttgatGTTGAGGAGTTCATGCCAAGTAACCATATCTGCGAGCAATGTACCGAGACGACAATACAATCTTATATATTCATCTCGAATACCAAGAAATCGTACCAAATACTTCAAAACTGTTTAAACGATTTGGAATCCAAAGTCGACGACATAAGCTGCACATTAGACAATCAAAACAACTACGAAAACTCTAATATAATGATTGTCATAGAATATGATGATGAGACTTGTAACCAACTGAAGGAACTGAACGCTGGGTGTAGCACTATTCTAACAGACAGACctatcattaaaaataaaaaagtacccATCAAACCCATGAACAAAGAAGGTAAAGAAAATAATGGCCCGGTGATAATACCTACGCAGAGAGTAGAGAAATACCCTAGAACCAATATTGCAAAGAGAAATGTAGCAATAGAAGAAAAGGTACCAACTCCAAATGTGACACTTCAAGAGGGCAAAATTGTCATAGAGCCTCTTGTTACTAAcagataccgggtaccagcatcGCCCCGGTTTAACACCTACTGCTGTGCGTCCTGTGATGATATATTCACAACCTACCGATCTTTGAAAGAGCATGAAAAAGCTAAGCACAACTCAATAATTTACAAATGCAGATATTGTGATAAAATCTACAACACCCAACAGTATCTAGACTTTCATTATCGTTCGTTGCATAATCAATCTAGATGCAGATTCTGTAAGGGTCTAATTACAGCTAATAACCTAAATGAACACCTGAAAGAGATGCACGGAAAAAACGTCCATAGCTGTGAGCAATGCGAATTGGTTTACTACACGAAAGAGCAATTAGACACCCATTGTAAAGCCACGCACGGAATATCAATGGATAAAAATAGCAAGGCTTGTGTCATGTGCTTGAAGAACTTAACAGAATTTGAAATAAGCAGTCACAAATGCAAGTTTTCATGCCTGGAATGCTTTGTATCACCGTGTATCCATTATGACTATTTAATGTCATACCGAGAACAGATCTTGAATCACTCAGCCTTAATACAATGTCTGGATTGTGATTACACAACAAAAAGGAAGGAACATCTGATAATGCATGTCAACCGTGAACATTTAGATCACCACCCCTTCACTTGCGGTCACTGTGGAACTCAATTCTACACTAAATTGTCCTTAAAAACTCACATTATCCAGTTCCATCAAGATATGAAATGTCAGTACTGTGAGGCCACTTTTAAGAACGTAAAGCACTTGCAGAGGCATCGTCTAGCTTGTAAATTAATCAGTCGATTACACGAATGCCGAAAATGTGTAGCATCATTTGACACAGTTCAAGAATTGGAGAAGCATATCAATTCCAGCCATAGCGCAATTGTGTTCCCATGCGTGcggtgcaataaagaatttaacgAGAAATCTTCTTTAGAGGATCATCATCTTAAGGTGCATActgaaatacaaaaaaagaagcGGAGGAAAATGATAGAATGTACCCTATGTGATATAACATTCAAAAACCTCAAGGAAATGATTGATCACGAACAATCGCACGACCCAGGGGAAGTGTACCCCTGCAAAGTGTGCCCCAAATCTTACCAAAGTCTAAAAAAAGTATACATGCACAAGCAAAAGcattacacaaataaaattatttgtccTGGCTGTAAAAAATCACTTATTAGCTCATATTACGACCAGCACAAGTCACGCTGCCCATTCTTAAAGGAAGACACCGGCGTTAACGCTTGCGACATCTGCGGTAAAGTTTTCATGACACAAGTTAGTTTAAAAACTCACCAGCTAACCCACACAAACCCGATACCATGTATACATTGTGGAAAGCGAATTAAACCTGCATCCATGAAGCGTCACTTAGAAATATGGCACTCAAGTTACATTGCCTATGAAGAGACGAAATCTAGACAACTACTACACTGCGATGCTTGTGTCTATGTGACCCGAAAGCACAGTGACTACGAGAACCATGTTAACAAAGTTCACTTGCAGATCAAGCCATACAGCTGCGATAAATGTGGAAAACAGTTTTGTGGCAAGTCAAGACTAGCTGAACACATGAGAACACATTCCACATCAAAAGTCTGCTTTTGCCCAACGTGTAATAAGAAATTTGCCAACAAAGCCTGTCTCAAAATGCATCTCAGGCGTCACACGAATGAAAACCCTTATGAATGCAACATCTGCTCTGAAAGGTTCCGGTCTTCGAGTATAATGAAGACTCATAGATTGAAGAAACACCACGATAAGACCATAGCATGTCCATTGTGCGATGCAATGTACCATTTAGTGGCAGAAATGAGGTTCCATGTTAAAAAAACTCATTGGAAGAGTCCTGAACCGTTTGATTATAAGAAAATCGTTCCGGAGGAGTGTTATCATCTGTTCCAAGATAGAAGGCTGCAGAAACTTGGTGATGAAAATGGGTTACAAACTGGGTATATCATACCATAG
- Protein Sequence
- MEAPTKRSLEEQTNIEWLNQHLRTIFHSTQFCSLCLKTDGEFYSLDKMFAANEEITMRPLRDVVNYVFNFDVEEFMPSNHICEQCTETTIQSYIFISNTKKSYQILQNCLNDLESKVDDISCTLDNQNNYENSNIMIVIEYDDETCNQLKELNAGCSTILTDRPIIKNKKVPIKPMNKEGKENNGPVIIPTQRVEKYPRTNIAKRNVAIEEKVPTPNVTLQEGKIVIEPLVTNRYRVPASPRFNTYCCASCDDIFTTYRSLKEHEKAKHNSIIYKCRYCDKIYNTQQYLDFHYRSLHNQSRCRFCKGLITANNLNEHLKEMHGKNVHSCEQCELVYYTKEQLDTHCKATHGISMDKNSKACVMCLKNLTEFEISSHKCKFSCLECFVSPCIHYDYLMSYREQILNHSALIQCLDCDYTTKRKEHLIMHVNREHLDHHPFTCGHCGTQFYTKLSLKTHIIQFHQDMKCQYCEATFKNVKHLQRHRLACKLISRLHECRKCVASFDTVQELEKHINSSHSAIVFPCVRCNKEFNEKSSLEDHHLKVHTEIQKKKRRKMIECTLCDITFKNLKEMIDHEQSHDPGEVYPCKVCPKSYQSLKKVYMHKQKHYTNKIICPGCKKSLISSYYDQHKSRCPFLKEDTGVNACDICGKVFMTQVSLKTHQLTHTNPIPCIHCGKRIKPASMKRHLEIWHSSYIAYEETKSRQLLHCDACVYVTRKHSDYENHVNKVHLQIKPYSCDKCGKQFCGKSRLAEHMRTHSTSKVCFCPTCNKKFANKACLKMHLRRHTNENPYECNICSERFRSSSIMKTHRLKKHHDKTIACPLCDAMYHLVAEMRFHVKKTHWKSPEPFDYKKIVPEECYHLFQDRRLQKLGDENGLQTGYIIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00706288;
- 90% Identity
- -
- 80% Identity
- -