Etri030677.1
Basic Information
- Insect
- Eupithecia tripunctaria
- Gene Symbol
- -
- Assembly
- GCA_955876795.1
- Location
- OY041629.1:2561970-2566552[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.21 18 6.9 1.0 3 23 67 88 65 88 0.91 2 22 0.0011 0.091 14.1 1.5 2 23 160 181 159 181 0.96 3 22 0.0034 0.29 12.6 0.1 1 23 185 208 185 208 0.96 4 22 0.0058 0.49 11.8 1.3 1 23 240 263 240 263 0.94 5 22 3e-05 0.0026 19.0 3.3 2 23 275 297 274 297 0.96 6 22 3.7e-05 0.0031 18.8 2.0 1 23 303 325 303 325 0.98 7 22 1.3 1.1e+02 4.4 5.4 1 23 427 450 427 450 0.94 8 22 0.66 57 5.4 0.0 2 23 477 501 476 501 0.92 9 22 3.3 2.8e+02 3.2 4.2 1 23 523 545 523 545 0.97 10 22 1 88 4.7 0.3 1 23 549 572 549 572 0.88 11 22 0.00092 0.079 14.3 1.5 1 23 578 600 578 600 0.98 12 22 0.037 3.2 9.3 3.8 1 23 606 629 606 629 0.96 13 22 0.0048 0.41 12.1 0.2 2 23 637 659 636 659 0.96 14 22 0.00017 0.014 16.7 2.9 1 23 665 687 665 687 0.97 15 22 5.7e-07 4.8e-05 24.5 0.5 2 23 694 715 693 715 0.97 16 22 0.14 12 7.5 2.4 1 22 721 742 721 742 0.96 17 22 0.026 2.2 9.8 1.7 1 23 923 946 923 946 0.94 18 22 0.15 13 7.4 0.0 2 23 975 997 974 997 0.95 19 22 0.085 7.2 8.2 0.5 2 23 1020 1041 1019 1041 0.96 20 22 0.0024 0.21 13.0 0.1 1 23 1045 1067 1045 1067 0.95 21 22 0.1 8.7 7.9 3.4 1 23 1072 1095 1072 1095 0.96 22 22 0.0055 0.47 11.9 3.9 1 23 1106 1129 1106 1129 0.96
Sequence Information
- Coding Sequence
- ATGTTCAACGTTcttccgaacaccctgtataaactatCAGTACAAATATTTTCAGGTGATCAAGAAGACCCGACAGGAAATCCTAAGTTCAGCAAACCTGATCCACAAGAAATGGAAATGCAAAAACACAATGTTAGACTGATATCCATGTACTCGAACGCGACTCCACTGTCGCGACATACAGACTTAGGATACGGGTGTGCTTTTTGCCCCGAATACTACCAAAAACCTTCCGATCTAAAGAGACATACACTAGATTGCCACGATACAAACACTAGAGCTGCTTATATGAGTAAACCACGCTTTGGATCAGGAAGCTACGTGGTCAAACTCGACGTAACAAATCTGAAATGTACTCTTTGCGAACAAGATATCGAATACGTAGACGTTAAGGAACATCTTGAGGATCATGGAAAATTTATTCACGAGCTTTCAAACAGCTACACAATACCGTTCAAGTTCGACGATGATACTCTCAAGTGTATGTTCTGTAATGAAGTTTTCAGATCATTCAAAACACTCCAAATGCATATGAACGAGCATTATAAAAACTATGAGTGTCCTGTCTGTGGTGTAGGGTTCATAAACCAACTAATGGTCAAAACGCATTACAAAAACTCACATAAAATCGGTGTTTTCGCTTGCAGCTGCGGAGAACTTTTCGATACCATAAATAAGAAGAAATTGCACGAACTGCATgctcacaataaacacaaatacaaatgtGGCTACTGCGAGGAGTTCTTCAAGTCGTCTGATACGAAACGTATCCATTTAACCaacgtacataatataaatgttCCATCTCTATCATTTTCAATTCAGTGCAACGAATGTGATAAACATTTCAATAAACAAAGTCATCTTGCCATCCACGTAAAGAAAGATCACAATAAAGAGACACGGTTCACCTGCTCTGACTGCAAGAAGGCTTTCTTCTACAAATCCCAACTGGACTTACATATGATCAAACACATGCAGACGAAAGATTTCAAGTgtGTCCTCACAGACTACAAACCCATAAAACTGGAAGTTGAATGGGATTTAGAAAAAAGCTTGGAAATTACAAGTATAAAAGAAGAGAGTTCATCTTCCGATGATAAAAAGAAAAGACGTAAACGCGGAAAGAAGAGAAAACTCGATGACTTCAGACCGCTTAAGATTAAACCACCCGCAAAAGCTGAAGTTTTAGACGTGGACAAACATAGATACAACGTTCGGACGATAATACAATACTCCAATGCAACGCCGATCAGAGCGCACTACGCAGGGAATGGATACGCTTGCTGCTTCTGCAAACAATACTTCCATAAAGCATCAGAACTCAAGGAGCACACGCTCCAATCTCACgacgaacaaacaaaaaagaaatatatGCAGAAGGCTTTCCTTTTCAAGCTATTTGTCAAACTTGATATTACATCACTGCGTTGTACAATTTGCTCAGCTGGTATTATATTTGATACTCTCGAACAACTCATAGAGCATTTGAACTCGGCACATCAAAAAGGAATACATACGGACATTAAGAATCAAATCATGTGTTTTAAGTTAGATGAGGAAGTTTTTCGGTGTTTTATCTGTACAGTTGAATATCACAGCTTCAAAAATTTACTTGAACATGCACATTCGCACTATAGGAACTTTATATGCGAGACATGCGACGCTGGCtttataaacagacttaaattaTACGGACACGTCTACAACAAGCATAAAGGCGCAGGTTCGCATAAATGCAACACATGCGCGAAAATTTTCGATACcccaataaaattaaaaacccaTGAAAGAATACATTTAGGTACAGTTCTCTATAAATGCCACGAATGCAACGACAAATTCACAAAGAAGAAAGAGAAAAGAGATCACATGATAAACGTACATGGAGCTAAATTCTCCAGGATCAAATGCACAGCTTGCGACAAGCTGTTTATTAGTAAAGCCTCGCTCAGCGTCCACGTGAACAGAGACCACTTAATGGATAGGCGACACCAGTGCGAACTTTGCGAAAAGACCTTCTTCACGTCATCATTCTTGAGAGATCACATGGTATCCCACTCTAGGGTGCGAGAGATCCAATGCGATGAATGCCCGAAAACGTTTGCGAGGAAGAAAGCGTTACGTGAGCATATGAAATCTCACACTGGTGATCGTAGGTTCAAGTGCACATTTTGCGACATGGCTTTTCTGCAGAAGTGTAGCTTGAAAGGGCACTTGAGAAGTATCGTCGTCAGAGACCACAAAGCAATCAAATCGGAGGTAGGAAACTCATGGGGTGTTACTATCGTTAAAGTGAAAGGTCCTAATACTGAAAATCCCGTACTTGATGTTACTGAagtaaaaactaataaaaaatctaaaaagaaaCATCGTAAATTTGAAGAAGTTGAAGTAAAACCAAAGAAATTTAATATCGATCAAGAATATATTTGTCAGAAACCCTTTGATCTACCGGCTGATAACAAACCTAATACATCCAAAGCAAAATCCACAGCTgcattaaaaatcaaaataaacccACCACccgatataataataaaacaaattaaacctAAAACCGATGAAACTAAACCTAAAGAGGCCAAATTAAAACCGCAAACGAAAAAAGAACCCCTTAAAATGGACGCACCAattcaaagaataaaaatagtcCCTCCACCAGACATGGATTTTATGATGGAGCTAGACAAGCACAGATTCAACATACGTACCGTTATgcaatactcaaacgcaacccCGATAAGAAACCACGTAAAAAGCGGTTTCGTTTGCTGCTTCTGCGATGCTCACTTTCCCAAACCAGCAGACCTAAAAATTCACACTATCCAAACCCATACAGACGATGAAAGCAAAGACAAGTTCTTCCGAAAGAAAGCAGTCTTATACTCATTCATGGTAAAACTGGATATAACTCATTTAGTTTGCAATATCTGCCAAATTGATATCGAAACGCTCGAGCAGCTTATATCCCACCTCAACAGTATCCATCAGAAAAATTTACACACAGATATAAAGAACCACATTGTCTGCTTCAAATTCGACAGCGATGTGATGAGATGTCTCGTTTGCGCTCAAGAATTTAACAGCTTCAAATTGCTATCTGAACACATGAACCAGCATTATACTAATTTCGTTTGTGATGAGTGTGGTGCTGGGTTTATTAACAGGAGACAGTTGCTCCTACACTCTGATAAACATAAAGTTGGGGAACACAAATGTGGGTCATGCAATAAGGTATTTCAATCTCTGAAGAGGATGAAGACCCATGAACGTGTCACGCACGTGTATAACTCGGGTTCAGGCACGCACGGATTTAGATGCCACCTTTGTAACGAAAAGTTTAGGAATAAAAAGACGAAGGTGGACCACATGATGCAAGTTCATGGAATTCAATAA
- Protein Sequence
- MFNVLPNTLYKLSVQIFSGDQEDPTGNPKFSKPDPQEMEMQKHNVRLISMYSNATPLSRHTDLGYGCAFCPEYYQKPSDLKRHTLDCHDTNTRAAYMSKPRFGSGSYVVKLDVTNLKCTLCEQDIEYVDVKEHLEDHGKFIHELSNSYTIPFKFDDDTLKCMFCNEVFRSFKTLQMHMNEHYKNYECPVCGVGFINQLMVKTHYKNSHKIGVFACSCGELFDTINKKKLHELHAHNKHKYKCGYCEEFFKSSDTKRIHLTNVHNINVPSLSFSIQCNECDKHFNKQSHLAIHVKKDHNKETRFTCSDCKKAFFYKSQLDLHMIKHMQTKDFKCVLTDYKPIKLEVEWDLEKSLEITSIKEESSSSDDKKKRRKRGKKRKLDDFRPLKIKPPAKAEVLDVDKHRYNVRTIIQYSNATPIRAHYAGNGYACCFCKQYFHKASELKEHTLQSHDEQTKKKYMQKAFLFKLFVKLDITSLRCTICSAGIIFDTLEQLIEHLNSAHQKGIHTDIKNQIMCFKLDEEVFRCFICTVEYHSFKNLLEHAHSHYRNFICETCDAGFINRLKLYGHVYNKHKGAGSHKCNTCAKIFDTPIKLKTHERIHLGTVLYKCHECNDKFTKKKEKRDHMINVHGAKFSRIKCTACDKLFISKASLSVHVNRDHLMDRRHQCELCEKTFFTSSFLRDHMVSHSRVREIQCDECPKTFARKKALREHMKSHTGDRRFKCTFCDMAFLQKCSLKGHLRSIVVRDHKAIKSEVGNSWGVTIVKVKGPNTENPVLDVTEVKTNKKSKKKHRKFEEVEVKPKKFNIDQEYICQKPFDLPADNKPNTSKAKSTAALKIKINPPPDIIIKQIKPKTDETKPKEAKLKPQTKKEPLKMDAPIQRIKIVPPPDMDFMMELDKHRFNIRTVMQYSNATPIRNHVKSGFVCCFCDAHFPKPADLKIHTIQTHTDDESKDKFFRKKAVLYSFMVKLDITHLVCNICQIDIETLEQLISHLNSIHQKNLHTDIKNHIVCFKFDSDVMRCLVCAQEFNSFKLLSEHMNQHYTNFVCDECGAGFINRRQLLLHSDKHKVGEHKCGSCNKVFQSLKRMKTHERVTHVYNSGSGTHGFRCHLCNEKFRNKKTKVDHMMQVHGIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00699473;
- 90% Identity
- -
- 80% Identity
- -