Eexi018541.1
Basic Information
- Insect
- Eupithecia exiguata
- Gene Symbol
- -
- Assembly
- GCA_947086465.1
- Location
- OX352256.1:4372450-4377778[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.027 1.7 9.5 0.2 3 23 52 73 50 73 0.94 2 22 0.11 7.3 7.5 3.7 2 23 145 166 144 166 0.96 3 22 0.0019 0.12 13.1 0.7 1 23 170 193 170 193 0.96 4 22 0.00078 0.05 14.4 1.8 1 23 225 248 225 248 0.98 5 22 2.3e-05 0.0015 19.2 2.0 2 23 256 278 255 278 0.96 6 22 0.00019 0.012 16.3 2.5 1 23 284 306 284 306 0.97 7 22 1.6 1.1e+02 3.9 5.9 1 23 412 435 412 435 0.94 8 22 3 1.9e+02 3.1 0.0 3 23 463 486 461 486 0.82 9 22 2.6 1.7e+02 3.3 4.0 1 23 508 530 508 530 0.97 10 22 0.87 55 4.8 0.3 1 23 534 557 534 557 0.88 11 22 0.00077 0.049 14.4 1.5 1 23 563 585 563 585 0.98 12 22 0.031 2 9.3 3.8 1 23 591 614 591 614 0.96 13 22 0.004 0.26 12.1 0.2 2 23 622 644 621 644 0.96 14 22 0.00014 0.009 16.7 2.9 1 23 650 672 650 672 0.97 15 22 4.7e-07 3e-05 24.5 0.5 2 23 679 700 678 700 0.97 16 22 0.12 7.6 7.5 2.4 1 22 706 727 706 727 0.96 17 22 0.021 1.4 9.8 1.7 1 23 908 931 908 931 0.94 18 22 0.077 4.9 8.1 0.0 2 23 960 982 959 982 0.95 19 22 0.071 4.5 8.2 0.5 2 23 1005 1026 1004 1026 0.96 20 22 0.002 0.13 13.0 0.1 1 23 1030 1052 1030 1052 0.95 21 22 0.042 2.7 8.9 2.9 1 23 1057 1080 1057 1080 0.96 22 22 0.0058 0.37 11.6 4.4 1 23 1091 1114 1091 1114 0.96
Sequence Information
- Coding Sequence
- ATGGGAATATGTGATGAAGAAGATGCGACAAGCAATCCGAAATTCATCAAACCTGATCCTGAAGAAATGGAAATGCAGAAACACAATGTTAAACAAATAGTCCTGTACTCCAACGCGACACCACTATCGCGACATACAGACTTAggctacgggtgcgctttttgccccgaatactatcaaaaaccttccgatcttaagaaacatatactgaattaccacgatataaacactagagctacttatatgagtaaaccacgctttaggtcaggaagctacgtggtcaaactcgacgtaacaaatctaaaatgtactctatgcgaacaggacgtcgaatacgtagacgttaaggaacattttgatgtacatggaaaatatatgcacgatctttcaaagagctacacagtaccattcaagtttgatgacgatattctaaagtgtatgttctgttacgaagtttgcagatcattcaaaacactacaaacgcatatgaacgagcattataagaactacgagtgtcatgtctgtggtgtaggcttcataaaccaaataatggtcaaaactcattataaaaactcgcataaaatcggagttttcgcttgcggctgcggagaagttttcgataccatcaataagaagaaattgcacgaattgcgtgctcacgataaacataaatacaaatgcggatactgTGATCAGTTCTTCAAGTCGTCTGATAAGAAACGGATGCATTTAATAACCGTACATAATGTTAATTTCCCATCAATTCAGTGCAACAAATGTGATAAATTTTTCACAAAACAAGGTCATCTAGCCATTCATGTAAAAAAGGATCACAATAAGGAGACGCGGTTCAATTGCTCTTACTGCAAGAAAGCTTTCTTTTTCAAATCCCAACTGGACTTACATATGATCAGACACTTGCAGACAAAAGATTTCAAATGCGAAATTTGCAGTATCCTCACAGACTACAAACCTATAAAACTGGAAGTTGAATGGGATTTAGAAACAAGCTTGGAAATAACAAGTATTAAAGAAGAGAGTTCATCTTCCGATGATAAAAAGAAAAGAGGTAAACGCGGGAAGAAGAAAAAAATCGATGACTTCCGACCGCTTAAGATTAAACCACCCGCAAAAGCAGAGGTTTTAGATGTGGAAAAACATAGATACAACGTTCGTGCGTTATTACAATACtccaatgcgacgccgatcagagcgcactacgcagggaacggatacgcttgctgcttctgcaaacagtacttccacaaagcatcagaactcaaggagcacacgctccaatttcacgacgaatcaaccaaaaagaaatatatgcagaaggctttccttttcaagctgtttgtcaaactagatataacactactacgttgtacagtttgcgcatctgacattatatttgatactctcgaacaactcatagaacacttgaattctgcacaccaaaaaggaatacatacggatattaagaatcaaatcatgtgttttaagctcgatgaggaagtttttcgatgtttcatctgttcagttgaatatcacagctttaagaatttacttgaacatgcacattcgcattataggaactttatatgtgagacatgcgacgcgggctttattaacagacttaaactatacggacacgtctacaataagcataaaggcgcaggtgcacataaatgcaacacttgcgcgaaaattttcgatactcccataaaattaaaaacgcacgaaaggatacatttaggaacagttctatacaaatgccacgaatgcaacgacaagtttacgaagaagaaagaaaagagagatcacatgataaatgtacacggagctaaattttccaggatcaaatgcacagcgtgcgacaagctgtttattagtaaagcctcgctaagcgtccacgtaaacagagaccacttgatggataggcgacaccagtgtgaactttgcgaaaagacattcttcacgtcatcgtttttgagagatcacatggtatctcactctagggttagagaaatccaatgcgacgaatgccccaaaacgtttgctaggaaaaaagcgttacgtgagcatatgaaatctcatactggtgatcgtaggttcaagtgtactttctgcgatatggctttccttcagaagtgtagcttgaaagggcacTTAAGAAGTATCATCATCAGAGACCGCAAAGCAATCAAATCGGAGGTAGGAAACTCTTGGGGCGTTACTATTGTTAAATTGAAAGGGCCTAATACTGAAAATCCCGTAATTAACGATACTAAAGTAAAAATTAATAAAAAATCTATAAAAAAGGACCGGAAATCGGAAGAAATTAAAGTGAAATCAAAAAAATTTAACATCAAGCAAGTATCTATTATTCAGAAACCCTTTGATCTATTGGCTGATAACAAACCTAATACATCCAAAGAAGCAAATACTGCTGCTTTAAAAATAAAAATTAACCCTCCACCCGATATTATAATAAAACAAGTTAATCCTAAAACCGCCGAAACTAAACCCAAAGAGGCCAAACTAAAACCTGAAAAGAAAAAAGAACCCCTAACAATCGACACACCCATTCAAAGAATGAAAATAGTCCCTCCACCAGACATGGATTTTATGATGGAGCTAGACAAGCACAGATTtaacatacgtaatgtgatgcaatattcaaacgcaaccccaataagaaaccacgtaaaaagcggtttcgtttgttgcttctgcgacgcacacttccccaaaccaggagacctaaaaattcacacaatccaaacccacacagacgatgagagcaaagaaaagttcttccgaaagaaagcagtcttgtactcatttatggtaaaactagatataacaaatctagtttgcaatatctgccaagtcgctatcgagacgctcgagcaacttatttcccaccttaacagtatccaccagaaaaacttacacacagatataaaaaaccacatcgtctgcttcaaattcgacagcgatgtaatgcgatgtcttgtttgtgctcaagagttcaatagcttcaaactgctttctgaacacatgaaccagcattacactaactttgtttgcgatgagtgcggtgctgggtttattaacagaaggcagttgctcttacactctgataaacataaagttggggaacataaatgtggatcttgtgataaagtctttcaatcattgaagaggatgaagacccacgaacgcgtcacgcacgtgtataattctgttcttggcacacacgggtttagatgccatctttgtaacgaaaagtttaagaataaaaagacgaagttagatcacatgatgcaagttcatggggtTCAGTAA
- Protein Sequence
- MGICDEEDATSNPKFIKPDPEEMEMQKHNVKQIVLYSNATPLSRHTDLGYGCAFCPEYYQKPSDLKKHILNYHDINTRATYMSKPRFRSGSYVVKLDVTNLKCTLCEQDVEYVDVKEHFDVHGKYMHDLSKSYTVPFKFDDDILKCMFCYEVCRSFKTLQTHMNEHYKNYECHVCGVGFINQIMVKTHYKNSHKIGVFACGCGEVFDTINKKKLHELRAHDKHKYKCGYCDQFFKSSDKKRMHLITVHNVNFPSIQCNKCDKFFTKQGHLAIHVKKDHNKETRFNCSYCKKAFFFKSQLDLHMIRHLQTKDFKCEICSILTDYKPIKLEVEWDLETSLEITSIKEESSSSDDKKKRGKRGKKKKIDDFRPLKIKPPAKAEVLDVEKHRYNVRALLQYSNATPIRAHYAGNGYACCFCKQYFHKASELKEHTLQFHDESTKKKYMQKAFLFKLFVKLDITLLRCTVCASDIIFDTLEQLIEHLNSAHQKGIHTDIKNQIMCFKLDEEVFRCFICSVEYHSFKNLLEHAHSHYRNFICETCDAGFINRLKLYGHVYNKHKGAGAHKCNTCAKIFDTPIKLKTHERIHLGTVLYKCHECNDKFTKKKEKRDHMINVHGAKFSRIKCTACDKLFISKASLSVHVNRDHLMDRRHQCELCEKTFFTSSFLRDHMVSHSRVREIQCDECPKTFARKKALREHMKSHTGDRRFKCTFCDMAFLQKCSLKGHLRSIIIRDRKAIKSEVGNSWGVTIVKLKGPNTENPVINDTKVKINKKSIKKDRKSEEIKVKSKKFNIKQVSIIQKPFDLLADNKPNTSKEANTAALKIKINPPPDIIIKQVNPKTAETKPKEAKLKPEKKKEPLTIDTPIQRMKIVPPPDMDFMMELDKHRFNIRNVMQYSNATPIRNHVKSGFVCCFCDAHFPKPGDLKIHTIQTHTDDESKEKFFRKKAVLYSFMVKLDITNLVCNICQVAIETLEQLISHLNSIHQKNLHTDIKNHIVCFKFDSDVMRCLVCAQEFNSFKLLSEHMNQHYTNFVCDECGAGFINRRQLLLHSDKHKVGEHKCGSCDKVFQSLKRMKTHERVTHVYNSVLGTHGFRCHLCNEKFKNKKTKLDHMMQVHGVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00705321;
- 90% Identity
- -
- 80% Identity
- -