Etri031117.1
Basic Information
- Insect
- Eupithecia tripunctaria
- Gene Symbol
- -
- Assembly
- GCA_955876795.1
- Location
- OY041629.1:7357592-7362166[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 4.3 3.7e+02 2.8 0.4 1 11 112 122 112 132 0.83 2 23 0.2 17 7.0 3.2 1 23 163 185 163 185 0.97 3 23 0.0021 0.18 13.2 0.8 2 23 190 212 189 212 0.95 4 23 0.022 1.9 10.0 4.4 3 21 217 235 216 236 0.93 5 23 0.001 0.088 14.2 3.3 1 23 245 268 245 268 0.96 6 23 0.0048 0.41 12.1 0.3 2 21 375 394 374 395 0.94 7 23 0.081 6.9 8.2 3.0 1 19 425 443 425 448 0.89 8 23 1.7e-05 0.0015 19.8 1.7 1 23 453 475 453 475 0.98 9 23 0.22 19 6.9 4.7 1 21 478 498 478 499 0.92 10 23 0.00052 0.044 15.1 0.4 1 23 511 534 511 534 0.90 11 23 8.7e-05 0.0074 17.6 2.1 1 23 540 562 540 562 0.97 12 23 0.22 19 6.9 1.3 5 23 572 590 570 590 0.97 13 23 0.0018 0.15 13.5 0.9 1 23 596 619 596 619 0.98 14 23 0.015 1.3 10.6 0.2 3 23 629 650 628 650 0.96 15 23 0.00031 0.027 15.8 0.3 2 21 765 784 764 785 0.94 16 23 0.058 4.9 8.7 0.0 3 23 820 841 819 841 0.94 17 23 0.0009 0.077 14.4 0.5 2 23 847 868 846 868 0.95 18 23 0.018 1.6 10.3 3.2 2 21 872 891 871 892 0.92 19 23 1.5e-05 0.0012 20.0 0.4 1 23 916 939 916 939 0.95 20 23 0.0015 0.12 13.7 3.2 1 23 945 967 945 967 0.96 21 23 0.045 3.8 9.1 0.2 1 23 973 995 973 995 0.98 22 23 0.014 1.2 10.6 0.1 1 23 1001 1024 1001 1024 0.94 23 23 1.2e-05 0.00099 20.3 1.2 1 23 1030 1053 1030 1053 0.97
Sequence Information
- Coding Sequence
- ATGGAAGAAGCCAACACTCCGCAACAGCTGTGCCAACAATGCATGTCCAACATCACCGCCTTTCTACCCTTCCTGAAACTCTGCAAGCAATCTGTTAAACATTGGACCTTTCTAACCGAGAATTTATTCAACCTTTCTGCCCAGAAGACTTTTAACACAGCTTTCATCTTTGTCAACGATAAAATTGATAAAGTCACCTCTGTGTTCGAGAAGAGGGATAGAGACAAGAATAAGTTGTGGCATGTTGTGACAAAGCGAATTAACCAGCTAGAGTCGGCTAGACGGACCAGAGAGTCCAGTGAAAATGAAACAACGAAGCCGGGAAAACTTATCTACTCTTGCGTAGAGTGCGGCGCGAAGTTTAGCTGCATTGACAAAATTAATAACCACTTAGCGAACCAGGGAAAGCGTTTATGTACTCGTTGCCACGAGATTATCGATCTAAAAGCTTTTGGAGAGCATCTTGAATCGCATTCAATCCCTTTCTTCACCTGCAAGATCTGTTTCTTACCCTTTGAGTGTAAATATCAGTTGGCAAAACACAAAAGTGTGCATAAAGGTAGAGTCATGTGCGGGGAATGCAAAAAAACTTTTCCCTTAGCTCACTACCTAAATATTCACGTTAACAGGAAGCATGAGCGTGCTTTCTGCAACAAATGTGATAAAATGTTTTCGAATCGCATATGTTACAACAAGCATCGAAGCAAATGCAAATCTAAGAAACCAGAGAAATATATTTGTCATCACTGCTCAAAAGAGTTCCGTGTGAAAGGGAATATTAAGTTGCATATAAATCAAATGCATTCAAAGATACTGTCCTATCAGTGCGAGGTGGACGACGGCCCCACTCTCCCGCCGGGGCTCTGCGGCGTCTGCGCCGGCGATGTTGTATCCGCCGCCAAATTCAGACAACTTACCGAAAAGTCTGCGAAATGCTGGACCGAAGCGGCTCAATACCTCTCACGAATAGACAGCGAGGGCAACGACACAAAAACTCTGCTTTACGTCTACGAAGAAGACACTTTAATATTCTACGAGAAACGATCCAAGAGTGTTAAATCTGTGGTCACAGCCCTCGGTAATTACGAGAAGGAAACatcgataaataaaaataatcctaCTTCATGCCCGTTCTGTGATAAACGGGTGACTTCAGTGCAGAATCTTAACCAACATCTCAAAAACAGCTCGAAAATAATGTGCATATGCGGCTGTCTTATGGACAAATCTGAGATCTGTAAACACTTGCGAGATACACATAAGATCGAGGTCTTCGAATGCAGTATCTGTCATGAGCAGTTTCGGAGTAATGAGGAGCTAAAGTGCCATAACACGGGATCCCACGGCGCTAAGTTGTTCGTTTGCGAGCATTGCGGACGTGGTTACAGAAACCAGAGAGCCTTGCGGGCCCATTACTATACCCACACTTTGTTCAACTGCTCCGCTTGCGGCAGAACTTTTGAGAACAATCGCTGTTACCGTCACCACAAAACTACATGTATATCTAAACACAAAAACGACTTTAGTGTCTTTGAGTGCAATGACTGCGGACGGCAATATGACAAGAAAGGATCTCTTAGAATACATGTCgtacaaaaacatttaaacgTCTTACCCTTCGTTTGTCAAGTCTGCGGCAAGCAAACTTCTACCTTAAGCCATTTAAAATCGCACTCTAAAGTTCACGAAGCGGATAGGAAGATTCGAGAATGCCACTGCGGGGCAAAGTTCCGGACTGAGTTAGGGTACCGTTTACACCAGAGAATCCACAGTGGTTTGAGGCCTTTTAAATGCGAGGAGTGCGAGGAGAGTTTCATATCAGCTTCTAGACGCTCTGATCATATGAAGAGACGACATAAGAGTGTGAAAGATATGCCGCATGGTTGCGAGCAGTGCTTAGCTCGGTTCATCAGGCCTTGGGAACTGAAGAAGCATTACAAGCTCCTGCATAGTTCAATTGTGGATGTGCAGCCGATAAAAGAAGAGACGTTCTGTCCGAGCGGTGTTTGCGTTGCTTGCGCAAGTGCAGCACTGGCCGCGGAAGAGTTCCGTCTATTCGTCCGCAACGCCGCCTCTCTCTGGCGCCGCGCCATCACCAATCTCTCCCAACTACCCCACGAGGCGTCCAACAACGCTAAATCCGTTTGCGCTGTCGTTTCCCCCAACATAACTGTCGACACACACAGTGATTTCGACGCCGGCGATGCAACTGAAGTCATCGATAAATTGCAGACGAAGTTGACTAAAAAACAAGAGAGAAAACCTCGCGTTCTCCGCACCGGGCCGGCCGTAACCTGCCCTGATTGCAAAAAGCAGTTCTCAGGTCCTCATTTATTGCAAACGCATCTACAGAACAGCGATAGGAAAGACGCTTGTGGAATTTGCGGCGCCGTTGTTGAGATCGGTGCTGGTTTGAAATATCATCTGACAACGGTGCACAGACAACGTGCTATCCTCTGTAAGGAATGCCCGACCGTTGTGATAACAGAAGCAGAGCTCAAGGCACATGTGAGCTTAGCTCATAAACCTGGGGCTCTAAACTGCACCGCTTGTGGCAGATTCTTTACCCGCCAAGGATCCTACGATAGTCATATCCAAATGCACATCGTTTTGACCTGCAGACTCTGCGGTACCCAATTCTCTAACAGAAGCTGCTTCCGCCAACACAGATCATCTTGCGAACCCAACGCAAAACCTAAATCGATCCCCCGCATACGTCGTTCCAACAACCGCGATCCCGGTCATTACATATGCGACTACTGTCAAAAGACCTACAGCTCTCGGCCGCAATTGAAGAACCATATACTCTGGATCCATTTAGACCACAGGCCGCACCAATGCTCCTTTTGCGGGAAGCGATTCTACACGTCAACGAGGTTGAACGAGCATACCGTTGTCCACACGAGGGTGAGGAACTTCGAGTGTGATCTATGTGACGCGAAACTAGTATCCAAAAGTGCTGCAATTTACCACAGACGAAGGCACACTGGGGAGAAACCCTACGTGTGCGATGACTGTGGAGCAGCCTTTATCTCCTCATCAAGGAGGTTAGAACACGCTAAACGGAAACACAATAAAGGGACTCGGTTCAAGTGTACGGAGTGCACTGCTAGCTTCGTGCGCAGACGGGAGCTAGAGAAGCATATGGAAAAAAATCACAAAGGCGCTGTTAAGTCTGATGTATTGGAATGTGAATTTGAAGTCTCAAATCTTGAAGTTGTTTCATAG
- Protein Sequence
- MEEANTPQQLCQQCMSNITAFLPFLKLCKQSVKHWTFLTENLFNLSAQKTFNTAFIFVNDKIDKVTSVFEKRDRDKNKLWHVVTKRINQLESARRTRESSENETTKPGKLIYSCVECGAKFSCIDKINNHLANQGKRLCTRCHEIIDLKAFGEHLESHSIPFFTCKICFLPFECKYQLAKHKSVHKGRVMCGECKKTFPLAHYLNIHVNRKHERAFCNKCDKMFSNRICYNKHRSKCKSKKPEKYICHHCSKEFRVKGNIKLHINQMHSKILSYQCEVDDGPTLPPGLCGVCAGDVVSAAKFRQLTEKSAKCWTEAAQYLSRIDSEGNDTKTLLYVYEEDTLIFYEKRSKSVKSVVTALGNYEKETSINKNNPTSCPFCDKRVTSVQNLNQHLKNSSKIMCICGCLMDKSEICKHLRDTHKIEVFECSICHEQFRSNEELKCHNTGSHGAKLFVCEHCGRGYRNQRALRAHYYTHTLFNCSACGRTFENNRCYRHHKTTCISKHKNDFSVFECNDCGRQYDKKGSLRIHVVQKHLNVLPFVCQVCGKQTSTLSHLKSHSKVHEADRKIRECHCGAKFRTELGYRLHQRIHSGLRPFKCEECEESFISASRRSDHMKRRHKSVKDMPHGCEQCLARFIRPWELKKHYKLLHSSIVDVQPIKEETFCPSGVCVACASAALAAEEFRLFVRNAASLWRRAITNLSQLPHEASNNAKSVCAVVSPNITVDTHSDFDAGDATEVIDKLQTKLTKKQERKPRVLRTGPAVTCPDCKKQFSGPHLLQTHLQNSDRKDACGICGAVVEIGAGLKYHLTTVHRQRAILCKECPTVVITEAELKAHVSLAHKPGALNCTACGRFFTRQGSYDSHIQMHIVLTCRLCGTQFSNRSCFRQHRSSCEPNAKPKSIPRIRRSNNRDPGHYICDYCQKTYSSRPQLKNHILWIHLDHRPHQCSFCGKRFYTSTRLNEHTVVHTRVRNFECDLCDAKLVSKSAAIYHRRRHTGEKPYVCDDCGAAFISSSRRLEHAKRKHNKGTRFKCTECTASFVRRRELEKHMEKNHKGAVKSDVLECEFEVSNLEVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00704256;
- 90% Identity
- -
- 80% Identity
- -