Basic Information

Insect: Eupithecia subumbrata
Gene Symbol: -
Assembly: GCA_949316285.1
Location: OX438643.1:9711565-9713956[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.039 6.9e+02 1.4 0.1 27 52 160 185 151 187 0.85

2 14 0.44 7.7e+03 -2.0 0.1 22 32 183 193 178 205 0.72

3 14 0.31 5.4e+03 -1.5 0.1 26 46 214 234 209 241 0.78

4 14 0.13 2.3e+03 -0.3 0.1 22 52 239 269 234 271 0.77

5 14 0.00059 10 7.3 0.0 21 53 294 326 285 327 0.86

6 14 0.0096 1.7e+02 3.4 0.1 21 52 322 353 320 354 0.86

7 14 0.00011 1.9 9.6 0.2 23 44 352 373 344 377 0.88

8 14 0.0071 1.2e+02 3.8 0.3 26 46 383 403 375 408 0.88

9 14 0.17 3e+03 -0.6 0.0 22 46 407 431 404 438 0.79

10 14 0.079 1.4e+03 0.4 0.1 21 31 434 444 430 459 0.82

11 14 0.0014 24 6.1 0.0 21 46 462 487 453 489 0.89

12 14 0.00027 4.8 8.3 0.0 21 46 490 515 486 517 0.91

13 14 0.00083 14 6.8 0.0 21 52 518 549 515 549 0.88

14 14 0.00075 13 6.9 0.0 21 48 546 573 544 579 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.039	6.9e+02	1.4	0.1	27	52	160	185	151	187	0.85
2	14	0.44	7.7e+03	-2.0	0.1	22	32	183	193	178	205	0.72
3	14	0.31	5.4e+03	-1.5	0.1	26	46	214	234	209	241	0.78
4	14	0.13	2.3e+03	-0.3	0.1	22	52	239	269	234	271	0.77
5	14	0.00059	10	7.3	0.0	21	53	294	326	285	327	0.86
6	14	0.0096	1.7e+02	3.4	0.1	21	52	322	353	320	354	0.86
7	14	0.00011	1.9	9.6	0.2	23	44	352	373	344	377	0.88
8	14	0.0071	1.2e+02	3.8	0.3	26	46	383	403	375	408	0.88
9	14	0.17	3e+03	-0.6	0.0	22	46	407	431	404	438	0.79
10	14	0.079	1.4e+03	0.4	0.1	21	31	434	444	430	459	0.82
11	14	0.0014	24	6.1	0.0	21	46	462	487	453	489	0.89
12	14	0.00027	4.8	8.3	0.0	21	46	490	515	486	517	0.91
13	14	0.00083	14	6.8	0.0	21	52	518	549	515	549	0.88
14	14	0.00075	13	6.9	0.0	21	48	546	573	544	579	0.88

Sequence Information

Coding Sequence: ATGTCAGGAGACAACAGACCCAGCACAGTGTGTTACATGTGCGATGCACAGTTATTAAGATGCTGCAGGTTCTTCGACATGTGCCAGAAGTCGGAGAAAATCTACACAGACCTGTTTCAGAACAACATAgagGTGACACAGGAGAGCCTAGCTAAGCACAACCTAGGGTGGATATACAACTTGTCCACATCACCGGTGAAATTAGTAACTTATGTTGAAGAGACTGAAATCACTGTTAAAGAAGAAGACACTTCAGATGATGAAGTGCTGATGCCCATGTTTGTTGAAGAAATCAAAACTGAATGCAATTTGCTTCATAGTAATGAAACTATTGATGATAAATCTATGACTACAAGTATACATGATAGCTCAAATGGAAATTGTAATGAAAAGAACATTAGGAGTAGAAAAAGAGACAAAACAAAATCTAAAATGAAACGAGAAATCCGTAGAGGCAATGTAGCTACACTATTTAAGTGTGATGTTTGTAAAAAGCCATTTACAAAGAGTTCATACTTGAAAAGGCACATGAGAATACACACTGAGGATAAGCCTTATTCTTGCAAAATATGCGCTGAGACATTTAGTTGTATGGATTCATTAAAAACTCATATGCTTGGACACACCACTGAGATGCCCACCTGTGATGTCTGTGCTAAAAGTTTTGCTACAAAAACAGTTCTCAATAGACACATCATGCAAGTACACTCTGGACAAAAACCAATGGAATGTAAAGTTTGCAATAAATCATTTCCTGTCAGAGATAGTCTACGGGCGCATATGAAAATTCACGTTGGATACAAGCCATTTGTCTGCAATGTCTGTGGGAAAACCTTTTTTGACAAAAGTCAATTGAAAGTCCACACCAGAATACATTCTGGAGAAAAGCCATTTACATGTGACTTGTGCAACAAGTCATTTACTCAATTAACTATATTAAAAAGTCATATGCATCTTCATACTGGAGAGAAGCCTTATGTTTGTAAAATATGCAATAAGTCATTTCGACATCGTTCCACGTTGGCCTATCACTCCCAACTCCATACTGGTGGTAAACCCTATACATGCCCTATATGCAACTGTGTCTTTGATCTGAAGCCTCTTTTACGCAAGCATATGGCGACCCACACTGACAACACCTCCCATGTATGCAAAGTTTGTAACAAAGCATTTATTCAAAGTGTTTGTCTAAGGAAGCACATGAAAATTCACACAGAAGAGAGACAATATACTTGCAATGTGTGTGGAAAATCCTTTTTCAGGAGTACTGGCTTAAACAATCACATGAAAACACACACTGGAGAAAAACCATACACATGCAATGTGTGTGGAAAATCATTCTCTCTTAACTCAACTTTGGTGAAACACAAAAGAATACACACGGGTGAAAGACCATACTCCTGTGACTTGTGCAATAAGAAATTCAGGCTCAGTGGCGCTTTGAGTAGACACATCAAAATGCACACTGGAGAAAAGCCATTTACCTGCAACATTTGCAACAAGTCATTCATTGGGAGTGGAGAattgaaaaaacatttgaaAGTACACAGTGAAGAAAAGCCTTATACTTGCTACACTTGTACAAAATCATTCAGAGATAAAAAGTCTTTAAAAATTCATATTAGATTGCACACTGGAGAAAAACCCTACACATGCAGTGTCTGTGGTAAATCATTTAcccaaagtagtagtttgaGTATGCATGTGAAGAGAGTTCACAGTGAAGACAAACCTTTCAGCTGCACTGTTTGTGGGAAATCATTTTCAGTCAATTATATTTTGACCAAACACATGAGAATTCACACTAAAGAGGAGCCACAATAG
Protein Sequence: MSGDNRPSTVCYMCDAQLLRCCRFFDMCQKSEKIYTDLFQNNIEVTQESLAKHNLGWIYNLSTSPVKLVTYVEETEITVKEEDTSDDEVLMPMFVEEIKTECNLLHSNETIDDKSMTTSIHDSSNGNCNEKNIRSRKRDKTKSKMKREIRRGNVATLFKCDVCKKPFTKSSYLKRHMRIHTEDKPYSCKICAETFSCMDSLKTHMLGHTTEMPTCDVCAKSFATKTVLNRHIMQVHSGQKPMECKVCNKSFPVRDSLRAHMKIHVGYKPFVCNVCGKTFFDKSQLKVHTRIHSGEKPFTCDLCNKSFTQLTILKSHMHLHTGEKPYVCKICNKSFRHRSTLAYHSQLHTGGKPYTCPICNCVFDLKPLLRKHMATHTDNTSHVCKVCNKAFIQSVCLRKHMKIHTEERQYTCNVCGKSFFRSTGLNNHMKTHTGEKPYTCNVCGKSFSLNSTLVKHKRIHTGERPYSCDLCNKKFRLSGALSRHIKMHTGEKPFTCNICNKSFIGSGELKKHLKVHSEEKPYTCYTCTKSFRDKKSLKIHIRLHTGEKPYTCSVCGKSFTQSSSLSMHVKRVHSEDKPFSCTVCGKSFSVNYILTKHMRIHTKEEPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00705647;
90% Identity: iTF_00696641;
80% Identity: iTF_00704243;