Basic Information

Insect: Eupithecia subumbrata
Gene Symbol: R1A1-element\ORF2
Assembly: GCA_949316285.1
Location: OX438635.1:5375811-5386072[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.16 14 7.3 4.1 1 23 297 320 297 320 0.95

2 24 6.6e-05 0.0057 18.0 3.8 1 23 323 345 323 345 0.97

3 24 5e-06 0.00043 21.5 2.0 1 23 380 403 380 403 0.95

4 24 1.9e-07 1.6e-05 25.9 1.0 1 23 409 432 409 432 0.97

5 24 7.5e-05 0.0064 17.8 0.2 1 23 457 480 457 480 0.94

6 24 3.2e-07 2.7e-05 25.3 1.8 1 23 486 509 486 509 0.97

7 24 0.0014 0.12 13.8 0.1 1 23 515 537 515 537 0.98

8 24 0.0023 0.2 13.1 0.2 3 23 545 566 545 566 0.94

9 24 0.00085 0.072 14.5 0.9 1 23 588 611 588 611 0.95

10 24 2.1e-07 1.8e-05 25.8 1.2 1 23 617 640 617 640 0.98

11 24 6e-05 0.0051 18.1 0.7 3 23 648 668 646 669 0.94

12 24 0.0028 0.24 12.8 1.1 1 23 683 706 683 706 0.95

13 24 1.3e-06 0.00011 23.4 2.1 1 23 712 735 712 735 0.98

14 24 5.2e-06 0.00044 21.5 3.5 1 23 740 762 740 762 0.98

15 24 3e-07 2.6e-05 25.3 1.2 1 23 768 790 768 790 0.97

16 24 7e-05 0.006 17.9 3.0 1 23 795 817 795 817 0.98

17 24 0.089 7.6 8.1 1.1 2 23 825 847 824 847 0.88

18 24 0.09 7.7 8.1 0.6 3 23 855 876 853 876 0.94

19 24 3.1e-05 0.0026 19.0 0.2 2 23 881 902 880 902 0.96

20 24 0.077 6.6 8.3 0.6 1 23 908 930 908 930 0.92

21 24 1.3e-05 0.0011 20.2 4.4 1 23 936 958 936 958 0.97

22 24 4.1e-05 0.0035 18.6 2.5 1 23 964 987 964 987 0.94

23 24 0.0007 0.06 14.7 4.2 1 23 993 1015 993 1015 0.98

24 24 0.00013 0.011 17.1 1.1 1 23 1021 1044 1021 1044 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.16	14	7.3	4.1	1	23	297	320	297	320	0.95
2	24	6.6e-05	0.0057	18.0	3.8	1	23	323	345	323	345	0.97
3	24	5e-06	0.00043	21.5	2.0	1	23	380	403	380	403	0.95
4	24	1.9e-07	1.6e-05	25.9	1.0	1	23	409	432	409	432	0.97
5	24	7.5e-05	0.0064	17.8	0.2	1	23	457	480	457	480	0.94
6	24	3.2e-07	2.7e-05	25.3	1.8	1	23	486	509	486	509	0.97
7	24	0.0014	0.12	13.8	0.1	1	23	515	537	515	537	0.98
8	24	0.0023	0.2	13.1	0.2	3	23	545	566	545	566	0.94
9	24	0.00085	0.072	14.5	0.9	1	23	588	611	588	611	0.95
10	24	2.1e-07	1.8e-05	25.8	1.2	1	23	617	640	617	640	0.98
11	24	6e-05	0.0051	18.1	0.7	3	23	648	668	646	669	0.94
12	24	0.0028	0.24	12.8	1.1	1	23	683	706	683	706	0.95
13	24	1.3e-06	0.00011	23.4	2.1	1	23	712	735	712	735	0.98
14	24	5.2e-06	0.00044	21.5	3.5	1	23	740	762	740	762	0.98
15	24	3e-07	2.6e-05	25.3	1.2	1	23	768	790	768	790	0.97
16	24	7e-05	0.006	17.9	3.0	1	23	795	817	795	817	0.98
17	24	0.089	7.6	8.1	1.1	2	23	825	847	824	847	0.88
18	24	0.09	7.7	8.1	0.6	3	23	855	876	853	876	0.94
19	24	3.1e-05	0.0026	19.0	0.2	2	23	881	902	880	902	0.96
20	24	0.077	6.6	8.3	0.6	1	23	908	930	908	930	0.92
21	24	1.3e-05	0.0011	20.2	4.4	1	23	936	958	936	958	0.97
22	24	4.1e-05	0.0035	18.6	2.5	1	23	964	987	964	987	0.94
23	24	0.0007	0.06	14.7	4.2	1	23	993	1015	993	1015	0.98
24	24	0.00013	0.011	17.1	1.1	1	23	1021	1044	1021	1044	0.96

Sequence Information

Coding Sequence: ATGGATGGGATATTCCCTGGCCTCCTACGCTGGGGTGTGGCATACATGAGCGGGGCGCTGACCTCTATCTTCAAGGCCTGCCTAGCCTTCCGCTACGTACCGCTTATGTGGAGAGAGGTTAGAGTCCTATTCATACCCAAACCAGGAAAAAGCGACTACACTGAAGTTAAGTCCTACAGGCCGATCAGTCTCACCTCTTTCTTACTCAAGACCCTAGAGAGGCCATGCGATCGATACATAAGGGACAACATACTAACAATAAAACCACTACACCCACAACAACACGCCTGCAGTtcaggcaaatcaacagaatctgcGCTGCACACAGTAGTTAGTAGATTAGAACAAGACATCTCAAACAAAACGCTCTGTCTCGCAGCCTTCATAGATATCGAAGGGGCTTTTGACAAGACGAACTTTGACAGCATTAATACATCCCTCCAAAAGCACGGAGTGGAGCCAGCGCTAGTAAATTGGATCATTAGCATGCTCAAGCTGAGGGCAGTACGGATCGACGTACACGGGGGGACCAGGGGAGTTGTGGCAAGAGGATGCCCACAGGGCGGCGTCTTGTCACCACTTCTGTGGAACCTAGTAGCTAATGACCTAATCACTAAGCTAAACGACCAACGCTTCTTTACGCTGACACCCAACAACCTGGCACCAACTGAGAGAATCCACAACCTAGCGGTCTCTCCGACCAAGGTGATATCCTCACTGGAGTGGAatttaaaagaagaagaagtggCTGTCAAAACGGAACTGCTTGATGACAGGAGACGAGGGGAGGAATCGTATGATGATGATATCCACGATAACGACTCAGAATCGGACCCTCTAGAAGCCCTAACAGTAAAAGCAGAAGCACTGGACATGAAACACACGATCCACCCATGCGAAGAGTGCCCCCGCCGTTTCAACTGCACTAAAGACCTCAACAAACACAAGACAACGGCCCACAAACACCACAGCTGCGACAAATGCGAAGAAACATTCAAGAAACAAGCATATTTAAAAATGCATATGAGATACCACACCGAAGAAATCCCATTCGATATAAAAACCATCGCAGAAATTCCGTTTGTCGAAACTAAAATCAGTGAATTGAGCAATGTGATAGCGATAGATGGATCGAAATTTTCTTGTGTGATGTGTAGCAAAACGTTCAGTCAGAAAGGTCATTTAAAAACTCACATGATGGCAATTCACACGGGTGAAAAACCCTTTCCTTGCACGTTATGTGACAAAAAGTTTGTTCAACGCAGTAATCTCTCCGCGCATATGAGATCAAGACACGTAAAGCCATTTAATAACTGGAATATGAGTGAAGAAGGTGGAGAAATAGGAGACGAGAAGAGTGCAAAGCCTTTCGCCTGTGCGATATGCAGCAAGACATTTGCAATGAAATCTTACCTCCAATCTCATATAATGGCTATGCATACCGGTGAACGCCCGTTTCCTTGCACGTTATGCGATAGAAAATACACGCAGAAAAGTCATTTACGAGCTCATATGAGGATCGCACACGCTGTAGAAAAACCATTTGAATGCGAGAGCTGCGAGCTAAGATTTGGAGATGCCGAAGAGTTGAGGAAACATGCGAAGATACACGCGAATGAGAAGCCACTAGGTTGTGTTACGTGTGGGAAGGTCTTTCAAGCAGAAAGCGATTTGAAGAAACATATTATTCTGCAACATGGAGAGGCTTCGCTACTTTGTGATCGCAGTGACATCATCAGTGATAATGTTAGCAAAAACCGGTTCCCTTGTGACCAGTGTAGTAAAACTTTCGGCTGGAAATCTCATTTAAAAACTCATATAATGGCAATTCACACCGGAGAAAGACCATTTTCTTGCAATATGTGTGAGAAGAAATTTGTACAAAGAAGCTCTCTCAGAGTTCATATGAGAACAGCTCATATGGAGCATAAACCACTGGCCTGTGATACATGCAACAAAGCATTTCAATCGGAAGCTAGCTTGAAGAAACATATGATTATTCACCATGGAGAATCTGAAAAAAATGACCCCAAAACTAACAAGCGGTTCTCATGCGCGACGTGTTCTAAATCATTCGGCTGGAAATCTCATTTAAAAACTCATATAATGGCAATTCATACTGGAGAAAAGCCATTTTCTTGCACGATTTGCGATAAAAAATTCGTTCAGAAAAATTATTTACGTACGCATATGTTGACTAGTCACTCAGGTGTGGGTTTTACTTGCGAAAGATGCAATAAGCGATGCACATCAGCCAGCAACCTACGGATACATATGAGATTGCACACTGGTGAGAAGCCATATGCCTGCAGTAAATGTAACAAATCATTTAAAAGGAATGACAGCCTGAAAGTCCATATGGCATCGCACCGCGGCGAACAGTTTACCTGCAAAGTATGTTCCGTTAGATTTACCTCCAAAACGAGCTATCAAACTCACATGCGGTTACACACAAGTCATTTACCGCCATTTTTGTGTTTAAGATGCGAGGAAAAGTTCAACACAAAAAGTGATTTAGACATACATAACACAAAAAGCCATGCAAATGATATGCCATTCGGATGCGACTCTTGCGAATTAAGATTCGACGATAAAAACgtactgaaaaaacatcaatTGCTACAACATGAAGAGAAATTAACGTGCGGTATATGCGTTAAATCTTTTAACGCGAAAAGTGCGTTGCGAAGACATATGTCTATACACAGCACGGAAAAACCATTCGCGTGTATAATCTGCAATAAATTCTACAAACAAGAGCGAATACTGAAGAAACATATGGAGATACATACAGAGGAGAAACAATTCGCATGTGACAGATGCGATAAGAAATTCTACCAAAAGTGTAACTTGACAAGCCATATGAGGATACACTCAGGTGAAAAGCCGTTTGTTTGTGACCGGTGTGGTAACAGTTTTAACCAGAAAAGTCATTTAAGAACTCATATATTGTTTATGCATACCTCAGAGAGGCCTTATTCCTGTGATGTGTGTAGTAAGAGATTTAGATTGAAGAGTTGCTTGCGGAATCATAAACTGGTGCATAGCGGGGAGAGGCCGTATCCGTGCAGTTTGTGTGAGAAGAAATATTATAAGAAGAGCGAATTGAAGTCTCATATAGCTAAAATGCATAATTCAATatctatagaaaatataacatga
Protein Sequence: MDGIFPGLLRWGVAYMSGALTSIFKACLAFRYVPLMWREVRVLFIPKPGKSDYTEVKSYRPISLTSFLLKTLERPCDRYIRDNILTIKPLHPQQHACSSGKSTESALHTVVSRLEQDISNKTLCLAAFIDIEGAFDKTNFDSINTSLQKHGVEPALVNWIISMLKLRAVRIDVHGGTRGVVARGCPQGGVLSPLLWNLVANDLITKLNDQRFFTLTPNNLAPTERIHNLAVSPTKVISSLEWNLKEEEVAVKTELLDDRRRGEESYDDDIHDNDSESDPLEALTVKAEALDMKHTIHPCEECPRRFNCTKDLNKHKTTAHKHHSCDKCEETFKKQAYLKMHMRYHTEEIPFDIKTIAEIPFVETKISELSNVIAIDGSKFSCVMCSKTFSQKGHLKTHMMAIHTGEKPFPCTLCDKKFVQRSNLSAHMRSRHVKPFNNWNMSEEGGEIGDEKSAKPFACAICSKTFAMKSYLQSHIMAMHTGERPFPCTLCDRKYTQKSHLRAHMRIAHAVEKPFECESCELRFGDAEELRKHAKIHANEKPLGCVTCGKVFQAESDLKKHIILQHGEASLLCDRSDIISDNVSKNRFPCDQCSKTFGWKSHLKTHIMAIHTGERPFSCNMCEKKFVQRSSLRVHMRTAHMEHKPLACDTCNKAFQSEASLKKHMIIHHGESEKNDPKTNKRFSCATCSKSFGWKSHLKTHIMAIHTGEKPFSCTICDKKFVQKNYLRTHMLTSHSGVGFTCERCNKRCTSASNLRIHMRLHTGEKPYACSKCNKSFKRNDSLKVHMASHRGEQFTCKVCSVRFTSKTSYQTHMRLHTSHLPPFLCLRCEEKFNTKSDLDIHNTKSHANDMPFGCDSCELRFDDKNVLKKHQLLQHEEKLTCGICVKSFNAKSALRRHMSIHSTEKPFACIICNKFYKQERILKKHMEIHTEEKQFACDRCDKKFYQKCNLTSHMRIHSGEKPFVCDRCGNSFNQKSHLRTHILFMHTSERPYSCDVCSKRFRLKSCLRNHKLVHSGERPYPCSLCEKKYYKKSELKSHIAKMHNSISIENIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00702195;
90% Identity: -
80% Identity: -