Esub027857.1
Basic Information
- Insect
- Eupithecia subfuscata
- Gene Symbol
- -
- Assembly
- GCA_963564075.1
- Location
- OY751124.1:3218473-3224585[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.064 1e+03 0.7 0.0 23 31 41 50 30 58 0.67 2 9 7.8e-06 0.13 13.3 0.0 13 52 226 265 221 267 0.90 3 9 0.02 3.2e+02 2.4 0.0 21 52 262 293 260 295 0.85 4 9 0.073 1.2e+03 0.6 0.0 21 49 290 318 283 323 0.82 5 9 0.34 5.5e+03 -1.6 0.0 21 31 318 328 312 344 0.76 6 9 8.8e-05 1.4 9.9 0.1 21 52 346 377 340 379 0.88 7 9 0.076 1.2e+03 0.5 0.0 21 49 391 419 389 424 0.82 8 9 0.31 5e+03 -1.5 0.0 21 31 419 429 412 446 0.76 9 9 0.0044 71 4.5 0.0 21 47 447 473 443 480 0.85
Sequence Information
- Coding Sequence
- ATGTCTTCTGTGTGTAGAGTTTGCCTCGACGGCAATACGACACTGCATTCCATAAAAAACAACCAACTCCTAGATGTCTACGAAACACTGTCTAAGAGCAAGttcAACTCTGAAGATGCAAGGCCGAGAGCTTTATGCCGTATTTGTTACTGGAAGCTGCTGAGGTGCCACACCTTCTCCCAAatggctcacagatctgaaaaGATCTTAAGCCATCTTTATGATAAAGGTTTTGAGgctACTCATGACTATATAACAGAGCTCAAGCTAGGAATGAAACAACAGTTGTCTGTGACCACTGTGCAGTCTATTACCATTGATGGTTGTACAACTATCAAAGATGAACCAATACCTAGTATTGAGATAAAAGAAGAGGTGACCGCAGATCAGGATACATTGCTGGAGGTTGAGTCTGCCCCTGGAGATGGTACAGAATGTCAATTACCATTAGACACCATTGATGGTTGTACACCTATCAAAGATGAACCAATACCTAGTATTGAGATAAAAGAAGAGGTGACCGCAGATCAGGATACATTGCTGGAGGTTGAGTCTGCCCCTGGAGATGGTACAGAATGTCAATTACCATTAGAAGATAACAGCGATCGAGAGAATGATGTGAAAGAAGTTCCTTCTAACAGTCATGTTGTTGGACACATGAgagttcacacaggggagaaaccatttgcctgcactgtatgggagaaaccatttgcctgcaatgtatgtgacaaagaatttagacaaaaaaataatttagttcaccacatgagaattcacagaggagagaaaccatttgcctgcactgtatgtgacaaagaatttggaCTAAAAGGTAATTTAGTTAAACActtgagaattcacacaggagagaaaccatttgcctgcaatttatgtggcaaagaatttggacaaaaaagtgttttagttaaacacatgagaattcacacaggagagaaaccatttgcctgcactgtatgtggcaaagaatttggaaaaaaatatcatttaggTCAACACATgcgaattcacacaggagagaaaccatttgcctgcaatgtatgtgacaaagaatttagacaaaaaaataatttagttcaccacatgagaattcacagaggagagaaaccatttgcctgcactgtatgtgacaaagaatttggaCTAAAAGgagagaaaccatttgcctgcaatttatgtggcaaagaatttggacaaaaaagtgttttagttaaacacatgagaattcacacaggagagaaaccatttgcctgcactgtatgtggcaaagaatttggaaaaaaatatcatttaggTCAACACATgcgaattcacacaggagagaaaccatttgcctgcactgtatgtgacgaagaatttagacaaaaaagtgcTTTAGTTAACCACATgataattcacacaggagagaaaccatttgcctgcaatgtatgtgactaa
- Protein Sequence
- MSSVCRVCLDGNTTLHSIKNNQLLDVYETLSKSKFNSEDARPRALCRICYWKLLRCHTFSQMAHRSEKILSHLYDKGFEATHDYITELKLGMKQQLSVTTVQSITIDGCTTIKDEPIPSIEIKEEVTADQDTLLEVESAPGDGTECQLPLDTIDGCTPIKDEPIPSIEIKEEVTADQDTLLEVESAPGDGTECQLPLEDNSDRENDVKEVPSNSHVVGHMRVHTGEKPFACTVWEKPFACNVCDKEFRQKNNLVHHMRIHRGEKPFACTVCDKEFGLKGNLVKHLRIHTGEKPFACNLCGKEFGQKSVLVKHMRIHTGEKPFACTVCGKEFGKKYHLGQHMRIHTGEKPFACNVCDKEFRQKNNLVHHMRIHRGEKPFACTVCDKEFGLKGEKPFACNLCGKEFGQKSVLVKHMRIHTGEKPFACTVCGKEFGKKYHLGQHMRIHTGEKPFACTVCDEEFRQKSALVNHMIIHTGEKPFACNVCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00703247;
- 90% Identity
- iTF_00703247;
- 80% Identity
- iTF_00703247;