Esub026511.1
Basic Information
- Insect
- Eupithecia subfuscata
- Gene Symbol
- -
- Assembly
- GCA_963564075.1
- Location
- OY751121.1:8921716-8938976[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0044 0.36 12.2 0.7 1 23 244 266 244 266 0.98 2 11 0.00029 0.024 15.9 0.7 3 23 275 295 273 295 0.98 3 11 9.8 8e+02 1.7 0.2 1 7 299 305 299 309 0.90 4 11 0.11 9.2 7.8 6.2 1 23 329 352 329 352 0.87 5 11 0.00027 0.022 16.0 1.2 3 23 360 381 359 381 0.96 6 11 6.9e-05 0.0056 17.9 0.1 1 23 394 416 394 416 0.96 7 11 5.4e-05 0.0043 18.2 0.2 1 22 422 443 422 447 0.94 8 11 0.00046 0.038 15.3 1.7 2 23 456 478 455 478 0.96 9 11 2.5e-05 0.0021 19.3 2.2 1 23 484 507 484 507 0.97 10 11 1.6e-05 0.0013 19.9 0.3 1 23 516 538 516 538 0.98 11 11 0.15 12 7.4 0.1 1 23 544 567 544 567 0.95
Sequence Information
- Coding Sequence
- aTGGAGGTTATTGATGAAAATAACCAGTGTTGTTTTGGATGCTTGTGCACTGAAGTAGAGTTTCATTTGCAGAAGTTTTCGCTACAATGCGAGGCTCTAAAAACTAATTTCCagGTTGATTCCATAGTTTTGTGCATAGTTTGCAGAAGAATAGCTCAGCGTGCAAATTTATTCATACAAAATGTGCAGAGCAACCAGATCTTATTGCAGAACTTTCACAATGACCTGTCATCTCTCCAAACAATCCGTACTCAAGTCCAATCATGCATATCCCTCGCTCATGCACCCCTGCCATACCTTGAGCTCTCTGGGACAGGCATCGAGGAATCCTGTGTTGTCCTCGCCCCTGAGCAGAAGATCAAGTTGGAGCCCAAAGAGGAAGTGGATCAATTGGAGGGGGAGTTTGTAGATGAGGGTGATGATTTTCATGACCCTTATGTAAAAGAGGAAGATTTTGGTCTTGCCAGCCTATTGAAAGAAGAATTAGAACTGACTGAAGAATTACACTGTAGTGACTTGAAAACCCATACTAAATCAATTAAGAAGAAACTCAAAAAGAAGGAAAGAAATGAAAAATctcataaaataagtaaaaagtgTAATGGTCGTCTGAAAATGACTATTTCTGTTAATGATCCGTCAAAGTATATTAGACTGCTAATAACAGAGAAGCAATGTAAGATGGAAAGACAGAAGAGAATGCAGGAGGAGTCCTTCTTGGGTAGCAGCTATAAATGTGAGGACTGTATCAAGGGTTTCTCACTTAAAGAAACCTTCGACAAGCATATGGTTTCGCACAGTTTGAGCAGTGGAAAATTTTGGTGCCCAATTTGCAAGCAGAGGTTTGAATCGGCGGCAAAACTCCGTAGCCATAAGCGATATCATTTTATACGCTACAAATGCCTTGACTGCGGGGTTATGAGAGTTTGTCTCATTTCTATAAAGGAACACTACACGAATAATCACAGTAGCTATAAAAGTGTTTTTAAATGCGCACATTGCCCTAAGGTTTTCAACAATAAAACAAAGCACCGTAAGCACGAGACATACACACATTCTCGCAAAGGCAGAATACTCTGCAACGTTTGTAACAAAAGCTACGTCAACAAGGATTCCCTGCTCTCACACAAACTAAGGAAACACCCACCAGACGGCGCAACAGACAAGTTGCGGAAGCGTCACGTCTGTGCGGTGTGTGGGAGTGTGTTCGCAACGCCCTCTCAGCTGAAGAGCCATGCACTGGTGCACTCTGAGCACCGCGATTACTACTGCGTCGAGTGTGATAGAAGTTTCAAAACTGCCGCCGTTTTGAAGCAACATTTGAAGACGGCCACGCCTCATATCAACTATTTGGAATTACCACTCTCTTGTGGGCACTGCGAGAAGAGGTTTTCCATAAAGCGGGATATAGAGCGGCACATGAACAGAGTTCATCTCAACATAAAGCCGTTCAAGTGTGACAAATGTGATAGGGCGTACGTGAACAGCTGGTCTCTCCGAGATCACCAGCGACACAGCCACGAGGGAGTGAAGCGGCCGCTGCGGTATCCCTGCGCTATGTGTGATAAGGTTTTTGATcgCAGTTCGATCCTAAAGTCCCACGTGCGCACGCACACCGGGGAGCGCCCGTACCACTGCGCACAATGTCCTGCGCAGTTCGCTCAgGGCTCGGCATTGGGCACACACGTAAAACTGGTCCACTTAAAGCTGACGAGAGACGGAAGACCTAAGCAAGCCTGCATGAAATGA
- Protein Sequence
- MEVIDENNQCCFGCLCTEVEFHLQKFSLQCEALKTNFQVDSIVLCIVCRRIAQRANLFIQNVQSNQILLQNFHNDLSSLQTIRTQVQSCISLAHAPLPYLELSGTGIEESCVVLAPEQKIKLEPKEEVDQLEGEFVDEGDDFHDPYVKEEDFGLASLLKEELELTEELHCSDLKTHTKSIKKKLKKKERNEKSHKISKKCNGRLKMTISVNDPSKYIRLLITEKQCKMERQKRMQEESFLGSSYKCEDCIKGFSLKETFDKHMVSHSLSSGKFWCPICKQRFESAAKLRSHKRYHFIRYKCLDCGVMRVCLISIKEHYTNNHSSYKSVFKCAHCPKVFNNKTKHRKHETYTHSRKGRILCNVCNKSYVNKDSLLSHKLRKHPPDGATDKLRKRHVCAVCGSVFATPSQLKSHALVHSEHRDYYCVECDRSFKTAAVLKQHLKTATPHINYLELPLSCGHCEKRFSIKRDIERHMNRVHLNIKPFKCDKCDRAYVNSWSLRDHQRHSHEGVKRPLRYPCAMCDKVFDRSSILKSHVRTHTGERPYHCAQCPAQFAQGSALGTHVKLVHLKLTRDGRPKQACMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00701326; iTF_00704292; iTF_00706287; iTF_00697636; iTF_00699476; iTF_00700384; iTF_00698557; iTF_00705351; iTF_00696701;
- 90% Identity
- iTF_00706287;
- 80% Identity
- -