Esub028933.1
Basic Information
- Insect
- Eupithecia subfuscata
- Gene Symbol
- -
- Assembly
- GCA_963564075.1
- Location
- OY751126.1:387454-392051[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.013 1 10.7 0.2 2 21 212 231 211 232 0.94 2 19 0.13 11 7.6 1.5 1 23 262 285 262 285 0.91 3 19 3.3e-05 0.0026 18.9 1.7 3 23 292 312 290 312 0.98 4 19 0.8 65 5.1 3.4 1 20 315 334 315 336 0.91 5 19 0.00047 0.038 15.3 0.3 1 23 348 371 348 371 0.94 6 19 2.8e-05 0.0022 19.1 2.0 1 23 377 399 377 399 0.98 7 19 0.065 5.3 8.5 1.2 5 23 409 427 407 427 0.97 8 19 0.0014 0.12 13.7 0.9 1 23 433 456 433 456 0.98 9 19 0.022 1.8 10.0 1.0 3 23 466 487 465 487 0.96 10 19 0.00016 0.013 16.8 0.3 2 21 599 618 598 619 0.94 11 19 3.6 2.9e+02 3.1 0.0 3 23 626 647 624 647 0.93 12 19 0.088 7.1 8.1 0.0 3 23 654 675 653 675 0.92 13 19 3.7e-05 0.003 18.7 0.6 2 23 681 702 680 702 0.95 14 19 0.024 1.9 9.9 3.5 2 20 706 724 705 726 0.93 15 19 1.3e-05 0.0011 20.2 0.3 1 23 750 773 750 773 0.95 16 19 0.0006 0.048 14.9 2.2 1 23 779 801 779 801 0.96 17 19 0.037 3 9.3 0.2 1 23 807 829 807 829 0.98 18 19 0.012 0.95 10.9 0.1 1 23 835 858 835 858 0.94 19 19 6.1e-05 0.0049 18.1 0.9 1 23 864 887 864 887 0.96
Sequence Information
- Coding Sequence
- ATGGAAGATGGCATCACTCCGCAACAGCTGTGCCAACAATGCATGTCCGACATCACCGCCTTTCTACCCTTCCTGAAACTCTGCAAGCAATCCGCTGAACATTGGAGCTTTCTATCTGAGAATTTGATCAACCCTTCTGCACAGAAGACTTTTAACACAGCGTTCATCTTTGTCAACGATAAAATTGATAAAGTTACCACTGTATTCGAGAAAAGGGATAGAATCAAGAATAAGTTGTGGCATGTCGTGGCAAAGCGAATTAACCAGCTAGAGTCGGCGAGACGGACACGAGAGTCTAGCGACAATGAACCAACGAAGCCGGGAAAGTTTCTCTACACTTGCGTGGACGACGGGCCCGCGCTTCCGCCGGGGCTCTGCGGCGTCTGCGCAGGCGACGTTATATCCGCCGCCAAATTCAGACAACTTACCGATAAGTCCACGAAATGCTGGACCGAAGCGGCTCAATACCTCTCACGAATAGACAGCGAGAGCAAAGATACAAAAACTCTGCTTTACGTCTACGAAGAACACACTTTAATATTCTACGAGAAACGGGCCAAGAGTGTTAAATCTACGGTCACAGCCCTCGGTGATTTCAAGAAGGAAACATTAATCAATAAAAAGAATCCTACTTCATGCCCATTCTGCGATAAACGGGTGATTTCTGTGCAGAATCTTAACCAACATCTTAAAAACAGCTCGAAAAGAATGTGCATATGCGGCTGGCTTATGGACAAATCAGAAATCTGTAAACACTTGCGAGAGACACATAAGATCGATGTCTTCGAATGCAGTATCTGTCATGAGCAGTTTCAGAGTAATGATATTCTAAAGTGGCATAGCACGAGATCCCACGGTCCTAACTCGTTCGGTTGCGAGCACTGCGGACGCAGTTACAGAAACCAGAGAGCCCTGCGGGCCCATTACTACACCCACACTTTGTTCGACTGCTCCGCTTGCGGGAGAACTTTCGAGAACATCCGCTGTTACCGTCACCACAAAACTACATGTAAACCTGAACACAAAAACGACTTTAGTATCTTTGAGTGTAATGACTGCGGACAGCAATATGACAAGAAAGGATCTCTTAGAATACATGTgatacaaaaacatttaaatgtCCTACCCTACGTTTGTCAGATCTGTGGCAAGCAAACTTCCACCTTAAGCCATTTGAAATCACACTCTAAAGTTCACGAGGCAGATAGGAAGACTTTAGAATGCCACTGCGGGGCTAAGTTCCGGACTGAGTTAGGGTACCGTCTACACATGAGAATCCACAGCGGTTTGAGACCTTTTAAATGTGAGGAGTGCGAGGAGAGTTTCATATCAGCGTCTAGACGCTCCGATCATATGAAGAGACGACATAAGAGTGTGAAAGACATGGCGCATGGTTGCGAGCAGTGCTTGGCTCGGTTCATCAGGCCTTGGGAACTGAAGAAGCATTACAAACACTCGCATAGTTCGATAGTGGATATAAAAGAAGAGATTTACTGTCCGGGCGGTGTTTGCGTAGCGTGCGCAAGCGCAGCGCTGGCAGCGGAAGAGTTCCGTCTATTCGTTCGCAATGCCGCCTCTCTGTGGCGCCGCGCCATCATCAACCTCTCCCAACTGCCCCACGAGGCTGCCGACAACGCCAAATCCGTTTGCGCGGTCGTTTCCTCCAACGTAACTGTCGACACACACAGTGATTTCGACGCTGGCGATGCGACTGAAGTCATCGATAAATTGCAGTCGAAGTTGACTAAGAAACACGAGAGAAAACCCCGCGTTCTCCGCACCGGGCCGACTGTAACCTGCCCTGATTGCAACAAGCAGTTTTCAGGTCCCCATTTATTGCAAACGCATCTACAGAACAGCGATAGGAAAGACGCTTGTGGAATTTGCGGCGCCGTTGTTTCTATAGGTGCTGGGTTGAAATATCATCTGACAACGGTGCACAAAGAACGCGCTATCCTGTGCAAAGAATGTCCGACCGTTGTGATAACAGAAGCTGAGCTCAAAGCACATGAGAGCTTAGCTCATAAATCTGGAGCACTGAACTGCACCGCTTGCGGACGGACCTTTACCCGCAAAGGGTCCTACGAAAGCCATATCCAAATGCACGTCGTCTTGACCTGCAGACTCTGCGGTACCCAATTCTCTAACAGAAGCTGCTTCCGCCAACACAGATCCTTTTGCGAACCCAACGCAAAACCTAAATCAATCCCCCGCATTCGTCGTTCCAACAACCGCGATCCCGGTCAATACGTGTGCGATTACTGTCAAAAGATGTACAGTTCTCGGCCGCAATTGAAGAACCATATACTCTGGATCCATTTGGACCACAGGCCGCACCAATGCTCCTTTTGCGGGAAGCGATTCTACACGTCAGCGAGATTGAACGAGCATACCGTTGTCCACACGAGAGTTAGGAACTTCGAGTGTGATCTATGTGACGCGAAACTAGTGTCAAAAAGTGCTGCAATTTACCACAGACGACGGCATACCGGAGAGAAGCCCTACGTGTGCGACGACTGTGGAGCAGCCTTTATCTCCTCATCGAGGAGGCTAGAACACGCTAAGCGGAAACATAATAAAGGGACCCGGTTCAAGTGCACGGAGTGCACCGCTAGCTTCGTGAGGAGACGGGAGCTTGAGAAACATGTGGAGAAAAATCACAAAGGCGCTGTTAAGTCTGAGGTATTCGAATGTGACTTCGAAGTCGCAAAGCTTGAAGTTATATCTTAG
- Protein Sequence
- MEDGITPQQLCQQCMSDITAFLPFLKLCKQSAEHWSFLSENLINPSAQKTFNTAFIFVNDKIDKVTTVFEKRDRIKNKLWHVVAKRINQLESARRTRESSDNEPTKPGKFLYTCVDDGPALPPGLCGVCAGDVISAAKFRQLTDKSTKCWTEAAQYLSRIDSESKDTKTLLYVYEEHTLIFYEKRAKSVKSTVTALGDFKKETLINKKNPTSCPFCDKRVISVQNLNQHLKNSSKRMCICGWLMDKSEICKHLRETHKIDVFECSICHEQFQSNDILKWHSTRSHGPNSFGCEHCGRSYRNQRALRAHYYTHTLFDCSACGRTFENIRCYRHHKTTCKPEHKNDFSIFECNDCGQQYDKKGSLRIHVIQKHLNVLPYVCQICGKQTSTLSHLKSHSKVHEADRKTLECHCGAKFRTELGYRLHMRIHSGLRPFKCEECEESFISASRRSDHMKRRHKSVKDMAHGCEQCLARFIRPWELKKHYKHSHSSIVDIKEEIYCPGGVCVACASAALAAEEFRLFVRNAASLWRRAIINLSQLPHEAADNAKSVCAVVSSNVTVDTHSDFDAGDATEVIDKLQSKLTKKHERKPRVLRTGPTVTCPDCNKQFSGPHLLQTHLQNSDRKDACGICGAVVSIGAGLKYHLTTVHKERAILCKECPTVVITEAELKAHESLAHKSGALNCTACGRTFTRKGSYESHIQMHVVLTCRLCGTQFSNRSCFRQHRSFCEPNAKPKSIPRIRRSNNRDPGQYVCDYCQKMYSSRPQLKNHILWIHLDHRPHQCSFCGKRFYTSARLNEHTVVHTRVRNFECDLCDAKLVSKSAAIYHRRRHTGEKPYVCDDCGAAFISSSRRLEHAKRKHNKGTRFKCTECTASFVRRRELEKHVEKNHKGAVKSEVFECDFEVAKLEVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00704256;
- 90% Identity
- -
- 80% Identity
- -