Basic Information

Insect: Eupithecia pulchellata
Gene Symbol: -
Assembly: GCA_963931895.1
Location: OZ007549.1:5059721-5064343[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00028 0.02 15.9 1.4 2 23 157 178 156 178 0.96

2 15 4e-05 0.0028 18.6 1.0 2 23 183 204 182 204 0.96

3 15 3.2e-06 0.00023 22.0 1.6 1 23 210 232 210 232 0.98

4 15 0.00035 0.025 15.6 0.3 1 23 237 259 237 259 0.97

5 15 3e-06 0.00021 22.1 0.4 1 23 265 287 265 287 0.98

6 15 1.9e-05 0.0013 19.6 0.6 1 23 293 315 293 315 0.97

7 15 1.6e-05 0.0012 19.8 1.8 1 23 321 343 321 343 0.96

8 15 4.2e-05 0.003 18.5 0.3 1 23 348 370 348 370 0.98

9 15 0.028 2 9.6 0.8 1 23 376 398 376 398 0.97

10 15 0.0011 0.077 14.1 2.0 1 23 429 451 429 451 0.97

11 15 8.4e-07 6e-05 23.9 0.7 1 23 457 479 457 479 0.98

12 15 7.1e-07 5e-05 24.1 1.2 2 23 486 507 485 507 0.95

13 15 0.00085 0.061 14.4 4.1 1 23 513 536 513 536 0.95

14 15 4.3e-05 0.0031 18.5 3.4 1 23 542 564 542 564 0.98

15 15 0.00014 0.01 16.9 1.5 1 20 570 589 570 591 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00028	0.02	15.9	1.4	2	23	157	178	156	178	0.96
2	15	4e-05	0.0028	18.6	1.0	2	23	183	204	182	204	0.96
3	15	3.2e-06	0.00023	22.0	1.6	1	23	210	232	210	232	0.98
4	15	0.00035	0.025	15.6	0.3	1	23	237	259	237	259	0.97
5	15	3e-06	0.00021	22.1	0.4	1	23	265	287	265	287	0.98
6	15	1.9e-05	0.0013	19.6	0.6	1	23	293	315	293	315	0.97
7	15	1.6e-05	0.0012	19.8	1.8	1	23	321	343	321	343	0.96
8	15	4.2e-05	0.003	18.5	0.3	1	23	348	370	348	370	0.98
9	15	0.028	2	9.6	0.8	1	23	376	398	376	398	0.97
10	15	0.0011	0.077	14.1	2.0	1	23	429	451	429	451	0.97
11	15	8.4e-07	6e-05	23.9	0.7	1	23	457	479	457	479	0.98
12	15	7.1e-07	5e-05	24.1	1.2	2	23	486	507	485	507	0.95
13	15	0.00085	0.061	14.4	4.1	1	23	513	536	513	536	0.95
14	15	4.3e-05	0.0031	18.5	3.4	1	23	542	564	542	564	0.98
15	15	0.00014	0.01	16.9	1.5	1	20	570	589	570	591	0.95

Sequence Information

Coding Sequence: ATGTCGTCTTCGCAATCTTTAGCAGTCGTCTGTCGAGTCTGTCTGGCGAGCGACGTAAAGATCTACAATATTGAAGATATCGGTTTATTGGAAATATATGAAAAACTCACAAATGCCCAGTTGCAGAGCGCGGGCCGGCCGCGAGCGGTGTGCTACATATGCGTGTCTCAGCTGCAGCGCTGTCTGCGACTCACCGCGCGGGCACAGCGCTCTGAGAAGTTCCTCAACGATCTACTACTGACCCATCAGAAGgtaacaAAGGAATCGGTGGCAACCCTCAACATTTCATCTACTCAAACCCTGTCAATAACAACATTAGAATCTATTTCCTACGACGGCTCAACAGATGGCGCTGATACTGAAATATCCATCAAAGACGAATACTTTGACTATGACGAACCCAGCGAAGAAATATTCACCAAAGTCGAGAAAGTGTCAGAGGAAATCAAAAAAGAGATTATATACCTTAATTGCAATGAGTGCGACTTAAAATTCCACAGCAAGAAGTTACTCATAGATCATAtaaaggtacacaataaaaGGACTTACTGCAAGAAATGTAATAAGTCATATTCAACGGTCAGTGCATTGAAGGGACATATGACTATACACACTGGAGAAATGCCGTATGCTTGCCATATATGTAGCAGGACTTTTAGACGGAAGCCATACCTAGAAGGGCATATCAGAATGCACACAGAAAAACCCTACTTCTGTAGTACTTGTAAACTAGGTTTTACAGAGGCTGATGGCTTGAAGAAACATATGGTAGTACACGCTAAAGGCAGACCGTATATATGCAGCCAGTGTGGCACCGGCTTTCCTTACAAAAGTTCGTTAGATCGCCACCAAAGAGTCCACACTGGTATTAAACCTTTTGATTGCACAAAGTGTAAAAACTCCTTCGGTGACCAAAGCAGTCTGGCCAAGCACATGCTTATCCACGAAGGTCTTAAGCCTTTTCCTTGCAATATGTGTGACTCGACTTTCAGACACGCGGCTAGCTTGAAAAGACATATGTATTTACATATACAAAACCCATTTACTTGCAATGTTTGTGATATGACATTTGATGAGGAAAATGGCTTAAATAAACATATGAAAGCCCATGTTGGCGAGAAGCCATTTGTGTGTGATAAATGTGAGCTAAAATTCGATATATACACAATGTACAAGAAACATTTAGAGATCCACGGAGAGAAAAATGAGGAAAAACCTCTGCCATCTTCTACGAGAATTATTCTAGATGCTTCCAGCGTCAGAAGTaagcataaaaaaaagaaacacaTCTGCGACTTGTGTAAAAAGGAGTTATTTAGCAACGCACATCTGATCCTCCACATGCGGATCCATAACGACGAACGGCCATTCCCCTGCGACGAATGCGATAAGAAGTTCCGAACCAAAGCGGTTTTACAAGCTCATAAACGAACTCATTCGGGTGAAAAAGTGTGCTCCTGCGAAATCTGTGGAAAATCCTTCTCGCAAACGGGGAGTTTGAATAAACACATGGTGATACACACGGGAGAATTACCCCACGCTTGCCATTTGTGTGCTAAAGCGTATAAGCAGAGTTGCCAGCTCACAGCCCATATAAGGAACATTCACGACGGAATAAAGAGGTTTTCATGTGATTTATGTAGTACAAGGTTCACAGCTAAAACTCATTTGAGAAGGCATATGAATATACATGCTGGAATTAAACCTTTTTCGTGCCTGAAATGCGGATTAAAATTCTCTACTCGAACGTCGCTGAAACGGCATACGACTAATTCATGTAAATAA
Protein Sequence: MSSSQSLAVVCRVCLASDVKIYNIEDIGLLEIYEKLTNAQLQSAGRPRAVCYICVSQLQRCLRLTARAQRSEKFLNDLLLTHQKVTKESVATLNISSTQTLSITTLESISYDGSTDGADTEISIKDEYFDYDEPSEEIFTKVEKVSEEIKKEIIYLNCNECDLKFHSKKLLIDHIKVHNKRTYCKKCNKSYSTVSALKGHMTIHTGEMPYACHICSRTFRRKPYLEGHIRMHTEKPYFCSTCKLGFTEADGLKKHMVVHAKGRPYICSQCGTGFPYKSSLDRHQRVHTGIKPFDCTKCKNSFGDQSSLAKHMLIHEGLKPFPCNMCDSTFRHAASLKRHMYLHIQNPFTCNVCDMTFDEENGLNKHMKAHVGEKPFVCDKCELKFDIYTMYKKHLEIHGEKNEEKPLPSSTRIILDASSVRSKHKKKKHICDLCKKELFSNAHLILHMRIHNDERPFPCDECDKKFRTKAVLQAHKRTHSGEKVCSCEICGKSFSQTGSLNKHMVIHTGELPHACHLCAKAYKQSCQLTAHIRNIHDGIKRFSCDLCSTRFTAKTHLRRHMNIHAGIKPFSCLKCGLKFSTRTSLKRHTTNSCK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00706278;
90% Identity: iTF_00699437;
80% Identity: -