Basic Information

Insect: Eupithecia pulchellata
Gene Symbol: -
Assembly: GCA_963931895.1
Location: OZ007549.1:5176024-5177664[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.11 7.6 7.8 6.1 1 23 84 106 84 106 0.96

2 16 6.9e-06 0.00049 21.0 1.7 1 23 113 136 113 136 0.97

3 16 0.00024 0.017 16.2 3.1 1 23 143 165 143 165 0.98

4 16 1.3e-05 0.00095 20.1 0.6 1 23 175 197 175 197 0.98

5 16 2.6e-05 0.0018 19.2 1.9 2 23 203 224 202 224 0.97

6 16 6.2e-05 0.0044 18.0 0.3 2 23 229 252 228 252 0.92

7 16 0.00018 0.013 16.5 1.2 1 23 258 280 258 280 0.97

8 16 1.9e-07 1.3e-05 25.9 2.1 1 23 286 308 286 308 0.98

9 16 8.1e-05 0.0058 17.6 2.0 1 23 313 335 313 335 0.98

10 16 8.7e-05 0.0062 17.5 0.1 1 23 341 363 341 363 0.96

11 16 2.3e-06 0.00016 22.5 1.6 1 23 368 390 368 390 0.98

12 16 1.1e-05 0.00075 20.4 0.6 1 23 396 420 396 420 0.96

13 16 3.1e-06 0.00022 22.1 1.2 1 23 426 448 426 448 0.97

14 16 1e-08 7.2e-07 29.9 0.9 1 23 454 476 454 476 0.98

15 16 0.00015 0.01 16.8 0.2 1 23 482 504 482 504 0.97

16 16 0.00013 0.0092 17.0 4.7 1 23 510 532 510 532 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.11	7.6	7.8	6.1	1	23	84	106	84	106	0.96
2	16	6.9e-06	0.00049	21.0	1.7	1	23	113	136	113	136	0.97
3	16	0.00024	0.017	16.2	3.1	1	23	143	165	143	165	0.98
4	16	1.3e-05	0.00095	20.1	0.6	1	23	175	197	175	197	0.98
5	16	2.6e-05	0.0018	19.2	1.9	2	23	203	224	202	224	0.97
6	16	6.2e-05	0.0044	18.0	0.3	2	23	229	252	228	252	0.92
7	16	0.00018	0.013	16.5	1.2	1	23	258	280	258	280	0.97
8	16	1.9e-07	1.3e-05	25.9	2.1	1	23	286	308	286	308	0.98
9	16	8.1e-05	0.0058	17.6	2.0	1	23	313	335	313	335	0.98
10	16	8.7e-05	0.0062	17.5	0.1	1	23	341	363	341	363	0.96
11	16	2.3e-06	0.00016	22.5	1.6	1	23	368	390	368	390	0.98
12	16	1.1e-05	0.00075	20.4	0.6	1	23	396	420	396	420	0.96
13	16	3.1e-06	0.00022	22.1	1.2	1	23	426	448	426	448	0.97
14	16	1e-08	7.2e-07	29.9	0.9	1	23	454	476	454	476	0.98
15	16	0.00015	0.01	16.8	0.2	1	23	482	504	482	504	0.97
16	16	0.00013	0.0092	17.0	4.7	1	23	510	532	510	532	0.97

Sequence Information

Coding Sequence: ATGAATGCAAAACCTTTTCAAAACTTATCAATAAGCTCTGCGGAGTCTATGGCCACGATATACATTGTTGAATCAACCGATAGCCTAGAAAAAGACGTAAAGCAAGAACCACTTGCGTTAAAAGAGGAAGATATACATGAAGAATCAATTTTTGAAGATGCctttgatgataatgatgatgaacctCTCAAGAAACCTTTAAAACTAGAGGACACAGCGAGTGGAGATAAAAATATCGCCAAGGAAGCATTCTTCTGCTATAAATGCAATTTATCTTTCAATCTCAAATTTCACTACGAAAAACACTCAAAGATACACTTAGATGAAGAAAAAATTTACGCTTGTAATGATTGTcccaaaaaatttaaacttaaacgAAGTTTAGTGAAACACATGCTAAAATTCCACAGAGATAAGAGCAAACTGTACCCTTGCACTAAATGTACTGAGAAATTCCATCGCAAAATCGCCTTGAAAAAACATTTACTCTCCCATAAAGATGCTAATGATCCTGTGGAAGAGTTCACGTGTGAAATTTGTAACAGAGTCGTCAACAACCTATACAATCTCCAAAAGCATAAGGCAACCCATACAGACGACTCATTAACCTGTGAAATGTGTGGAAAAAACTATCTCAACAAAAACACTCTCAAAAAGCACATGCGAACACATAACCTCCAGCATGCCTGCGACCAACCAGGCTGTGGCAAAATCTTCGCTCAGAAAAACCAACTAACCATCCACTCTAGAGTTCACAGCGGAGAGAGACCCTTTGCTTGCGATAAATGTAATAGAACCTACACGCTCTTGGACTCTTTGAAATACCACCAAAGAGGTCACGAAGGAAACAGGCCGTATAAGTGCAACATATGCGAGAAAGCCTTCTATAGGAAGTTCAATTTAACAAACCATATGAAAGCACATGAAAGGGAGTCATACAACTGCTTGCATTGCAGTAAAATATTCACACTACCAGTGCACTTAGAAACTCATATGCTTATCCATACTACATTAAAACCTCATGCTTGCGGCCTCTGTGATTTAACTTTCGCTGCACCAAGTAGTTTAAAAGCGCATATGGTAACCCATACAGACTATATGTTTACTTGCGACCGATGTGCCAAGAGCTTCCGCGACAAAAGCAGTTTGCAAAGCCATATAAAACTGCACGATGGTATTAAACCCCATGTCTGTCCAGAACCCAACTGTGGGAAAGCTTTCGTCCGGAAATTCCAGCTCAAAGAACATTCTAGAGTACATTCCGGAGAAAGACCGTACATTTGCAATGAGTGTGGTAAGACCTTTACACAGAGCAGCTCCTTGCTTTTCCACCAACGGCTTCACAGTGGGGAGAGGCCATACGTCTGTGAAATTTGTGGACGATCCTTCACAGATAAATACAGTTTACAGAAACATACTCGCGTTCATACTAATGAAAAGCCCTACGCTTGTGACAGTTGTGATTTAAGGTTCGCGTATCCTAGTGCGTTGCAAAAACATAGTTCTACTCATAGTGGGGAGAAACCGTTTGCGTGTGAGAGGTGTTACAAGATTTTTGGCCGTAAGTGTAGCTTGAGGAAGCATATGAAAACGCATTTGAGGGAAAAGTTTCAGAACCCGTTGCTTCTGCCTGCGAAATGA
Protein Sequence: MNAKPFQNLSISSAESMATIYIVESTDSLEKDVKQEPLALKEEDIHEESIFEDAFDDNDDEPLKKPLKLEDTASGDKNIAKEAFFCYKCNLSFNLKFHYEKHSKIHLDEEKIYACNDCPKKFKLKRSLVKHMLKFHRDKSKLYPCTKCTEKFHRKIALKKHLLSHKDANDPVEEFTCEICNRVVNNLYNLQKHKATHTDDSLTCEMCGKNYLNKNTLKKHMRTHNLQHACDQPGCGKIFAQKNQLTIHSRVHSGERPFACDKCNRTYTLLDSLKYHQRGHEGNRPYKCNICEKAFYRKFNLTNHMKAHERESYNCLHCSKIFTLPVHLETHMLIHTTLKPHACGLCDLTFAAPSSLKAHMVTHTDYMFTCDRCAKSFRDKSSLQSHIKLHDGIKPHVCPEPNCGKAFVRKFQLKEHSRVHSGERPYICNECGKTFTQSSSLLFHQRLHSGERPYVCEICGRSFTDKYSLQKHTRVHTNEKPYACDSCDLRFAYPSALQKHSSTHSGEKPFACERCYKIFGRKCSLRKHMKTHLREKFQNPLLLPAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00700314;
90% Identity: iTF_00697574;
80% Identity: -