Eint025036.1
Basic Information
- Insect
- Eupithecia inturbata
- Gene Symbol
- zfpm1
- Assembly
- GCA_963662085.1
- Location
- OY759205.1:7900705-7905304[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00038 0.028 15.5 0.1 1 20 115 134 115 136 0.95 2 20 0.092 6.8 8.0 2.6 1 21 166 186 166 187 0.94 3 20 0.36 27 6.1 0.4 2 21 284 303 283 304 0.93 4 20 0.029 2.1 9.6 1.6 1 23 334 357 334 357 0.92 5 20 0.03 2.2 9.5 2.7 3 23 364 384 362 384 0.91 6 20 0.83 61 5.0 3.4 1 20 387 406 387 408 0.91 7 20 0.00049 0.036 15.1 0.3 1 23 420 443 420 443 0.94 8 20 2.9e-05 0.0021 19.0 2.0 1 23 449 471 449 471 0.98 9 20 0.068 5 8.4 1.2 5 23 481 499 479 499 0.97 10 20 0.0015 0.11 13.6 0.9 1 23 505 528 505 528 0.98 11 20 0.049 3.6 8.8 0.3 3 23 538 559 538 559 0.95 12 20 0.00016 0.012 16.6 0.3 2 21 671 690 670 691 0.94 13 20 0.13 9.9 7.5 0.0 3 23 726 747 725 747 0.96 14 20 3.8e-05 0.0028 18.6 0.6 2 23 753 774 752 774 0.95 15 20 0.025 1.8 9.8 3.5 2 20 778 796 777 798 0.93 16 20 1.4e-05 0.001 20.0 0.3 1 23 822 845 822 845 0.95 17 20 0.00062 0.046 14.8 2.2 1 23 851 873 851 873 0.96 18 20 0.038 2.8 9.2 0.2 1 23 879 901 879 901 0.98 19 20 0.012 0.9 10.7 0.1 1 23 907 930 907 930 0.94 20 20 6.3e-05 0.0046 17.9 0.9 1 23 936 959 936 959 0.96
Sequence Information
- Coding Sequence
- ATGGAAGATGGCAACCCTCCGCAACAGCTGTGCCAACATTGCATGTCCGACATCACCGCCTTTCTACCCTTCCTGAAACTCTGCAAGCAATCCACTGAACATTGGAGCTTTCTATCTGAGAATTTAATCAACCATTCTTCTCAGAAGACTTATAAGTCTTATAACACAGCGTTCATCTTTGTCAACGATAAAATAGATAAAGTTTCCACTGTGTTAGAGAAGAGGGATAGAAACAAGAACAAGTTGTGGCATGTCGTCACAAAGCGAATTAACCAGCTCGAGTCGGCGAGACGAACACGAGAGTCCAGCGACAATGAACTAACGAAGCCGGGAAAGTTTATCTACACTTGCGTAGAGTGCGGCACGAAGTTTAGCCGGTTGGATAACATTAATAACCACTTAGCGAACCAGAAAAAGCGTTACTGTGCTCATTGCCACCAGATTATCGATCTAAAAGCTTTTGGAGAGCATCTGGAGTCACATTCAATCCCTTCCTACACCTGCAAGATCTGTTATTTATCCTTTGAGTGTAAATACCAGTtgataaaacacaaaaatGTGGACGACGGCCCTGCGCTCCCGCCGGGGCTCTGCGGCGTCTGCGCAGGCGACGTTATATCCGCTGCCAAATTCAAACAACTTACCGATAAGTCAAAGAAATGCTGGACCGAAGCGGCTCAATACCTCTCAAGAATAGACAGCGAGAGCAAAGACACAAAAACACTGCTTTACGTCTACGAAGAACACACTTTGATATTCTACGAGAAACGGGCGAAGAGTGTTAAATCTGCTGTCACAGCTCTCGGTAGTATCGAGAAGGAATCAACGATCAATAAAAAGAATCCTACTTCATGCCCATTCTGCGATAAACGGATGATGTCTGTGCAGAATCTGAACCAACATCTTAAAAACAGCTCGAAAAGAATGTGCATTTGTGGCTGGCTTATGGACAAATCAGAAATCTGTAAACACTTGCGAGAGACACATAAGATCGATGTTTTCGAATGCAGTATCTGTCATGAGCAGTTTCAGAGTAATGAGGTTCTAAAGTGGCATAACACGAGGTCGCACGGTCCTAAGTCGTTTGGTTGCGAGCATTGCGGACGTGGTTACAGAAACGAGAGAGCCTTGCGGGCCCATTGCTACACCCACACTTTGTTCGACTGCTCCGCTTGCGGGAGAACTTTCGAGAACATCCGCTGTTACCGCCACCACAAAACTACATGCAAACCTAAACACAAAAACGACTTCAGTATCTTTGAGTGTAATGACTGCGGACAACAATATGACAAGAAAGGTTCTCTTAGGATACATGTgatacaaaaacatttaaatgtcTTACCCTACGTTTGTCAGATCTGCGGCAAGCAAACTTCTACCTTAAGCCATTTGAAATCACACTCTAAAGTTCACGAGGCAGATAGGAAGACTTTAGAATGCCACTGCGGAGCTAAGTTCCGAACTGAGTTAGGGTACCGTTTACACATGAGAATCCACAGCGGTTTGAGGCCTTTTAAATGTGAGGAGTGCGAGGAGAGTTTCATATCGGCGTCTAGACGCTCCGATCATATGAAGAGACGACATAAGAGTGTGAAAGATATGGCGCATGGTTGCGTGCAGTGCTTGGCTCGGTTCATCAGGCCTTGGGAACTGAAGAAGCATTACAAGCTCTCGCATAGTTCGATAGTGGATATAAAAGAAGAGATGTTCTGTCCGGGCGGTGTTTGCGTAGCATGCGCAAGCGCAGCGCTGGCCGCGGAAGAGTTCCGTCTATTCGTCCGCAACGCCGCCTCTCTCTGGCGCCGCGCCATCATCAACCTCTCCCAACTACCCCACGAGGCTTCCGACAACGCCAAATCCGTTTGCGCGGTCGTTTCCCCCAACATAACTGTAGACACACACAGTGATTTCGACGCCGGCGATGCGACTGAAGTCATTGATAAATTACAGTCGAAGTTGATTAAGAAACACGAGAGAAAACCCCGAGTTCTCCGCACCGGGCCGACTGTAACCTGCCCCGATTGCAACAAGCAGTTCTCAGGTCCCCATTTATTGCAAACGCATCTACAGAACAGCGATAGGAAAGACGCTTGTGGAATTTGCGGCGCCGTTGTTGCTATAGGTGCTGGGTTGAAGTATCATCTGGCAACGGTGCACAAAGAACCCGCTATCCTGTGCAATGAATGCCCGACCCTTGTGATCACAGAAGCTGAGCTCAAAGCTCATCAGAACTTAGCTCATAAACCTGGGGCACTAAACTGCACCGCTTGCGGCAGGACTTTTACCCGCAAAGGGTCCTACGAGAGCCATATCCAAATGCACGTCGTCTTGACCTGCAGACTCTGCGGTACCCAATTCTCTAACAGAAGTTGCTTCCGCCAACACAGATCCTTTTGCGAGCCCAACGCAAAACCTAAATCAATCCCGCGCATACGTCGTTCCAACAACCGCGATCCCGGTCAATACGTGTGCGACTACTGTCAAAAGATGTACAGCTCTCGGCCGCAATTGAAGAACCATATACTCTGGATCCATTTGGACCACAGGCCGCACCAATGCTCGTTTTGCGGGAAGCGATTCTACACATCAGCAAGGTTGAACGAACATACCGTTGTCCATACGAGAGTTAGGAACTTCGAGTGTGATCTATGTGACGCGAAACTAGTATCTAAAAGTGCTGCGATATATCACAGGCGAAGGCATACTGGGGAGAAGCCCTACGTTTGCGACGACTGTGGAGCAGCCTTTATCTCCTCATCGAGGAGGCTAGAACACGCTAAACGGAAACATAATAAAGGGATTCGGTTCAAATGTACGGAGTGCACCGCTAGCTTCGTAAGGAGACGGGAGCTTGAGAAACATGTGGAGAAAAATCATAAAGCCATTGTTAAATCTGATGTATTCGAAAGTAATTTCAAGGTCACAAAGCTTGAAGTTATTTCATAA
- Protein Sequence
- MEDGNPPQQLCQHCMSDITAFLPFLKLCKQSTEHWSFLSENLINHSSQKTYKSYNTAFIFVNDKIDKVSTVLEKRDRNKNKLWHVVTKRINQLESARRTRESSDNELTKPGKFIYTCVECGTKFSRLDNINNHLANQKKRYCAHCHQIIDLKAFGEHLESHSIPSYTCKICYLSFECKYQLIKHKNVDDGPALPPGLCGVCAGDVISAAKFKQLTDKSKKCWTEAAQYLSRIDSESKDTKTLLYVYEEHTLIFYEKRAKSVKSAVTALGSIEKESTINKKNPTSCPFCDKRMMSVQNLNQHLKNSSKRMCICGWLMDKSEICKHLRETHKIDVFECSICHEQFQSNEVLKWHNTRSHGPKSFGCEHCGRGYRNERALRAHCYTHTLFDCSACGRTFENIRCYRHHKTTCKPKHKNDFSIFECNDCGQQYDKKGSLRIHVIQKHLNVLPYVCQICGKQTSTLSHLKSHSKVHEADRKTLECHCGAKFRTELGYRLHMRIHSGLRPFKCEECEESFISASRRSDHMKRRHKSVKDMAHGCVQCLARFIRPWELKKHYKLSHSSIVDIKEEMFCPGGVCVACASAALAAEEFRLFVRNAASLWRRAIINLSQLPHEASDNAKSVCAVVSPNITVDTHSDFDAGDATEVIDKLQSKLIKKHERKPRVLRTGPTVTCPDCNKQFSGPHLLQTHLQNSDRKDACGICGAVVAIGAGLKYHLATVHKEPAILCNECPTLVITEAELKAHQNLAHKPGALNCTACGRTFTRKGSYESHIQMHVVLTCRLCGTQFSNRSCFRQHRSFCEPNAKPKSIPRIRRSNNRDPGQYVCDYCQKMYSSRPQLKNHILWIHLDHRPHQCSFCGKRFYTSARLNEHTVVHTRVRNFECDLCDAKLVSKSAAIYHRRRHTGEKPYVCDDCGAAFISSSRRLEHAKRKHNKGIRFKCTECTASFVRRRELEKHVEKNHKAIVKSDVFESNFKVTKLEVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00704256;
- 90% Identity
- -
- 80% Identity
- -