Eexi007000.1
Basic Information
- Insect
- Eupithecia exiguata
- Gene Symbol
- -
- Assembly
- GCA_947086465.1
- Location
- OX352252.1:806677-812464[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.14 8.7 7.3 3.0 1 23 243 266 243 266 0.94 2 18 0.00044 0.028 15.1 2.2 1 23 271 294 271 294 0.98 3 18 1.9 1.2e+02 3.7 1.2 2 23 298 319 297 319 0.94 4 18 0.0042 0.27 12.1 1.3 1 23 324 347 324 347 0.98 5 18 0.00019 0.012 16.3 1.4 2 23 411 433 410 433 0.96 6 18 9.9e-05 0.0063 17.2 1.3 1 23 439 462 439 462 0.96 7 18 0.00031 0.02 15.6 1.3 2 20 466 484 465 484 0.95 8 18 0.064 4.1 8.3 0.3 2 23 495 517 494 517 0.95 9 18 0.00081 0.052 14.3 1.5 1 23 522 545 522 545 0.96 10 18 0.0014 0.091 13.5 0.3 2 23 558 579 557 579 0.96 11 18 0.0014 0.091 13.5 1.1 1 23 585 607 585 607 0.98 12 18 3.6 2.3e+02 2.8 0.2 2 16 613 626 612 632 0.74 13 18 1.3e-07 8.3e-06 26.2 0.4 2 23 644 665 644 665 0.97 14 18 6.8 4.3e+02 2.0 0.2 3 23 671 691 669 691 0.87 15 18 0.11 7.3 7.5 1.3 2 23 708 730 707 730 0.94 16 18 6e-06 0.00038 21.0 1.2 1 23 736 758 736 758 0.98 17 18 0.00066 0.042 14.6 6.7 2 23 765 786 764 786 0.96 18 18 0.017 1.1 10.1 3.6 1 23 792 815 792 816 0.95
Sequence Information
- Coding Sequence
- ATGGAGGCACCTATTAAGAGAAACCTTAAAGAGCAGCTGAACATAGAATGGCTAAAACAGCACTTGAGGACAATTTTTCACTCCCCTCAATACTGTTCCTTATGCCTCAAAACGGAAGGAGAGTTCTACTCACTTGACAAGATGTTTGCAGCCAATGAGGAGATATCTACGAGACCGCTGAGAGAAGTGGTCAACTATCTTTTCAATTTTGATGTCGAGGAGTTCATGCCAAGTAACATGATCTGCGAGCAATGTACTGAGAAGACAATACAATCTTTTATATTCATTTCAAACACCAAGAAATCATACCAAATACTCCAACACTGTTTAAACGATTTGGAATCCAAAGTCGATGACATAAACTGCACATTAGATGATCAAAACAACTACGAAAACTCTAACATAATGATTGTCATTGAATATGATGATGAGACTTACAAACAATTGAAAGAACTGAATGCTGGGTGCAGCACTACCCTTACAGACAAACCTATCGCTAAAAAAAAAGAAGCAGGTATCAAACACACACTGAAAGAAAAAGAAAATATTGGCCCGGTAATAATACCTACACCAAGAGTGGAAAGATACCCTAGAACCAATATTACGAAGAAAAATATTGCTGTAGAAGAAAAAGTACCAACCCCAAATGTGACACTTAAAGCGGGCAAAATTGTCATAGAGCCTCTGGTTACAAACGCGATACCAGCATCGCCAAGATTTAACACCTACTGTTGTACAACCTGTGACGATATATTCACATCCTACCGATCTTTGAAAGAGCATGAAAAAGCTAAGCATAACTCGGTAATTTTCAAATGCAGGATTTGTGATAAAATCTACAACACCCAACAGTATTTAGATTATCATTATCGGTCGATGCATGATCAATCTAGATGCAAATTCTGTCAAAATCTATTCACAGCTGATAAATTAAATGAACACCTAAAAGAGATGCATGGAAATAACACCTACAGCTGTGGACAATGTGAATTGGTTTACTACGCAAAAGAGCAATTAGAAACACACCATAGAACCACACATGGAACATTAATAGACAAAAATAGTAAGGTTTGTCTCATGTGTTTGAGGAACATAACAGAATCAGAAGCAAGCAACGTTAAAAGTCACAAATGCAAATTTTCATGCCTTGAATGCCTCAAGTCACCATGCATTCATTATAACTATTTAATGTCATACAGAGAACAGATCTTGAATCATTCAACGTTAATACAGTGTCTGGATTGTGACTACACAACAAAAAGAAAGGAACATCTCATAACGCATGTCAACCGTGAACACTTAGATCACCATCCCTTCACTTGCGGTGACTGTGGAACGCAGTTCTATACTAAATTGTCCCTTAAAACTCACATAATGCAGTTCCATCAAGATCTGAAATGTCAGTACTGTGACACCACTTTTAAGAACACAACACTCTTGCAAAGGCATCGTCCGGCTTGTAAGTTAATCAGTCGATTACAGGAATGCCAAAAATGTGTAGCATCTTTTGACACTGTTGAAGACTTGGACAGGCACACCAAATTGAGCCATAGTGCAATTGTGTTCCCATGCTTGCAATGTAATAAAGAATTTAACCTGAAATCTTCTTTAGAAGAGCACCATCTAAAGGTGCATACTGGAATACAAACAAAGAAGAGAAGGAAGATTATAGAATGTACCTTATGTGATATAACATTCAGAAACCTCAAGGAAATGACTGAGCATGAGCAGTCACATGAGCCAGGGGAAGTGTACCCCTGCAAAGTGTGCCCCAAATCTTACAAAAGTCTTAAAGAAGTGTACATGCACAAGCAAAGGCATTACACCAAGAAAATTCAATGTGCTGGCTGTAAAAAGTCAGTTATTAGCTCATATTACAACCAGCACAAGTTACGCTGCCCTTTCATAAAGGAAGAAACCGATGTAAACGTTTGCGACATCTGCGGCAAGGTTTTCTCAACACAGGTTAGTTTAAAAACCCACCAGCAAACTCACACAAGCCCTATACCATGTATACATTGTGGGAGGCGGATCAAACCGGCATCCATGAAGCGTCATTTGGAAATATGGCACTCAAGTTACATTGGCTTCGATGAGACAAAATCTAGACATCTGTTACTACACTGCAATGCCTGTAGCTACGTCACCCGAAAAAACAGCGACTATGAGAACCACGTTAACAAAGTTCACTTGCAGATTAAACCATACAGCTGTGATGTATGTGGGAAACAGTTTTGTGGTAAGTCAAGGCTCGCTGAACACATGAGAATTCATTCCACATCCAATGTCTGCTTTTGCCCAACATGCAATAAAAAATTTGCCAACAAAGTCTGTCTAAAAATGCATCTCAGGCGTCACACGAATGAAAATCCTTATGAATGCAACATCTGCTCTGAAAAGTTCCGTTCTTCGAGTATAATGAAGACTCATAGATTGAAGAAACACCATGATAAGACCATAGCCTGTCCATTGTGCGATGCAATGTACCATTTAGTGGCAGAAATGAGGTTTCATGTGAAAAAAACTCATTGGAAGAATCCTGAACCGTTTGATTATAAGAAAATCGTTTCTGAGGAGCATTATCATTTGTTCCAAGATAGGAGGCTCCAGAAACTCGGTGATGAAAATGGGTTACAAACTGGTTATATCTTATCATAA
- Protein Sequence
- MEAPIKRNLKEQLNIEWLKQHLRTIFHSPQYCSLCLKTEGEFYSLDKMFAANEEISTRPLREVVNYLFNFDVEEFMPSNMICEQCTEKTIQSFIFISNTKKSYQILQHCLNDLESKVDDINCTLDDQNNYENSNIMIVIEYDDETYKQLKELNAGCSTTLTDKPIAKKKEAGIKHTLKEKENIGPVIIPTPRVERYPRTNITKKNIAVEEKVPTPNVTLKAGKIVIEPLVTNAIPASPRFNTYCCTTCDDIFTSYRSLKEHEKAKHNSVIFKCRICDKIYNTQQYLDYHYRSMHDQSRCKFCQNLFTADKLNEHLKEMHGNNTYSCGQCELVYYAKEQLETHHRTTHGTLIDKNSKVCLMCLRNITESEASNVKSHKCKFSCLECLKSPCIHYNYLMSYREQILNHSTLIQCLDCDYTTKRKEHLITHVNREHLDHHPFTCGDCGTQFYTKLSLKTHIMQFHQDLKCQYCDTTFKNTTLLQRHRPACKLISRLQECQKCVASFDTVEDLDRHTKLSHSAIVFPCLQCNKEFNLKSSLEEHHLKVHTGIQTKKRRKIIECTLCDITFRNLKEMTEHEQSHEPGEVYPCKVCPKSYKSLKEVYMHKQRHYTKKIQCAGCKKSVISSYYNQHKLRCPFIKEETDVNVCDICGKVFSTQVSLKTHQQTHTSPIPCIHCGRRIKPASMKRHLEIWHSSYIGFDETKSRHLLLHCNACSYVTRKNSDYENHVNKVHLQIKPYSCDVCGKQFCGKSRLAEHMRIHSTSNVCFCPTCNKKFANKVCLKMHLRRHTNENPYECNICSEKFRSSSIMKTHRLKKHHDKTIACPLCDAMYHLVAEMRFHVKKTHWKNPEPFDYKKIVSEEHYHLFQDRRLQKLGDENGLQTGYILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00706288;
- 90% Identity
- iTF_00706288;
- 80% Identity
- -