Edod018614.1
Basic Information
- Insect
- Eupithecia dodoneata
- Gene Symbol
- -
- Assembly
- GCA_947044255.1
- Location
- CAMRHC010000120.1:1615963-1635796[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.5 2.8e+02 2.6 0.5 1 23 226 248 226 248 0.69 2 12 4.3 2.7e+02 2.7 1.3 1 20 302 321 302 323 0.92 3 12 0.28 17 6.4 0.4 2 23 339 361 339 361 0.94 4 12 3.8 2.3e+02 2.9 4.4 1 21 794 813 794 814 0.93 5 12 0.043 2.6 9.0 0.6 1 23 826 848 826 848 0.94 6 12 0.16 9.8 7.2 5.1 3 23 855 875 853 875 0.95 7 12 0.00089 0.055 14.3 0.3 3 23 982 1002 981 1002 0.90 8 12 0.054 3.3 8.7 1.5 1 23 1017 1039 1017 1039 0.97 9 12 1.5e-06 9.2e-05 23.0 2.6 1 23 1045 1067 1045 1067 0.98 10 12 0.00022 0.014 16.2 0.6 2 23 1073 1094 1072 1094 0.93 11 12 0.16 9.7 7.2 5.0 2 23 1101 1123 1100 1123 0.90 12 12 0.00018 0.011 16.5 0.6 3 23 1160 1181 1159 1181 0.97
Sequence Information
- Coding Sequence
- ATGTCAGAAAGCAGGAAGAGAAGCAGAAAATCTAAAATAGAAATTCGCGAAGACGACTGTGAATTAGAGGTTGTGTGTGCCGACGTAAACAGCGACGTGCAGCATTTGCAGTTGGCGGAGCCTCCAAGAATAGCCCCAAAAAGACCAAAAAAAGTGGAATATTATCCAGAAGTGCCAGTTATTCCTGATCATGATTACTGCTGGCCATTTACAGCCTCAAAGCCAATTACATACTCAAAGTTTGATAAACCTGATCATATCAAACTACCCAAGCGCACAGGAACCACCATTGATGGCTTAACAAAAACACCTCAAGGACCCTCTTTAAATCAGATTAAGATAAAAGTCGATCGGTACATTTTACCCAAGTTTCATTTTAAGGGTGGTGTTTTGCAAAAAATGgaaaacataaagaaatataaaggCAAAGACAATGGCAAGATGCGGATGTGCAAATATGTCCCAGAATTACTTTTCAAAGAGTCGAAGAAAATTGCTGAGACATCTGACAATTTCGCAGATAAAATACTCGATGTTGAGATGAGGAATCAATGGGGCAATGTATTGTATACTCCCAATAAGGTTCCTGCTCAGGATTTGAAGCTACAGGCCGCCATATGTACTTGGCAGGCTTGGTACAACGGATCTCGATTGGTACGAGAAGCACCACTGTTCTATCAGTGTCATATCTGTGAGCAAGCGTGGTGGAGACTCCAACCGTTCCGAGATCACATCCGACAACATGACGGCTCGAAGCTCATCATCTCCATGAAAGAGCATCTACATGAATCGTTCATAATAGCCAGCTATGAGATAGTTAACAAACTTATATACATCCCTATCGATGGAAACTGCTATCGCTGTGGTGAAGACGTTGAGTTCCATAAAGCGAATTGCCTCGCATACTCTTGCAGTAGATGCTCGAGGAGTGCTTACACGTGCACTGGCTTAAGATACCACGAATCCATTTGCTTATATGTCAATTTGGTCATGTACAACATTTCAATAGACCGTCAATGCACATTATGCAAGCATGTTTTGAACTCGGTAAGCTTAGTAGAAAAGCATATGATCGAAGCTCATTCTGTACGTTCAGATATACCCGTGCATAACTCTTTCAAAAACTGTGTTAGCTGCGGTGAGAAGTATTTTACATTTACTATGCACAATTGTTGTAAAAGTGGGCGGAACTGCAGTTGCGAGCATTGTTGCAGAAAGTTTGCTTCGACTAAGCTTATGCTTAATCATTCGTTGAGTTGCCACAATAGACCAGTATGTTGTAGAATCTGCAATATGCAGTTGAAAGCGAAATGCCAAGAGATGGAGCATCTTGTTGAGAATCATACGAGTAGTTACCGGTTGGTGTTCAAGTGCACGGGTTGCTGTACAAGTAATGTGTTGTTTATGAATGAAAAGTCGTTCAATTTACATCGACAGTTAGAGCATCAGAGGAAGGTAGATAGGAGGAGGCTATTTTTTGAAAAGaTGCTGGTACCAAAAAGCTGCCTGGATGACGATTACGAGGAAGAAGCCACTCTAATTGTTGTCGATCCTAGTCTACCCTCAAAATCCTTCTCAGACTTAGCAGCGGATGTCAAAGTGACAGTCGACGAAATCGACGTCAAGAAAGAGCCTGTAGACATGGACGAAAACGAAGAAGTTGATTACGAGGAAATGCTCTTAAAAATGTTCAATCAATCGCCTCAAAAGCCTGTCTCTAACGATAAAGTTATTAACACCGATAACAATACAGCAGGAGCTAACAACAGAATAGAAGAGTACAAAACAGAAGAAGATAGAGAAGCTTTCAAATTCGATCATGTATACAAAACTGAAGATACAACAGAATTCGACTACGGCAGTGTTAAAGTTAAAGCTGAACCAATAGATGATATCGATATTATAGAGAATCCAGTTGAGGAGGTTCAAATCAAAACGGAACCGGTCGATCCTTCTGAAATTGACGAAGAAATGATGAATGTCTGCTATGATTACGGTGAAGCGACTGTTAAAATTGAGAGGAATTATGAACCAGATGATTTCAGCATCAATGAACCAACAAGCAGCAGAGATGTAACAAGCGGCAAAGTTGAAACAAGTTTCAAAGATGTAACGAGCGGCAAAGTTGAAACAAGTAGCAAAGATCCAACAAGCAATGTTGTAACAGACAATGAAGATGAACTAATCATCAAGGAAGAATTTGATGATACGATCACAGTCAAAACGGATGATACCTCCACATCGTCAGAACCTTTCCACGAATTACTGACAGAGCTAGATATGTTCAGAGACGAcaagaagaaaaagaagaagaaattcAATTATGAATACTCGATTGAAGTTATCGATGCAAAAGGGAAGTTAAAACAAAGGAAGATGTACACATGCAGAAAATGTGGGTACACAGCGCAtcataagaaatataaaaaacatatggACACTACTTGTTTAGTTTCTCCGGGTGTAAACTGTAGTTATCCGTGCTCGATATGTGGTCTCACTTTTGTTATGTTCAAGACCTATGTGTTACATTTTGAGAAACATGGATATGATTTGATGTGTTGCTTTATTTGTGGAGCTAGGTTTTCAGAGGAGTTTAAGTTTTTGAAACATATGCATAAACATGTTAAGAGCAGCTATGTTGGTGTGCATTTGCTGGATAAAAGCGGGGAGGAGATTAAGAGGTCCCAGAAGCGTGTTACATGCATGAACTGTAAAGAAACGGTAGAGCAAGACACTATGTTCTCGCACTGGGAGAAACTACATCTTCAACTGAAGGAGATCAGAAGCGACGACGAGGAGCCGAGATTAGTGATCAAAGAGGAGCCAGCGCCCGAGCTGACCGTGGACTGTGAACGTGTTACCATGAACAACAAGGAGTTAGAACCAGCTATGCTTAAACTCGCGACAGAAAATCTTCAATTGGACTCAAACGAGAAGGAGTGTATAATCTGCTATCGCGTGTTCTCGCGCCGCTACGACCTGAAGAGGCACATCGTGGAGCATCTACTGATGGATGCGCATATGAAGAAgattaaatatagAGATTTCCGCTGCCAGATCTGTTCGGAAGGTTTCCCTCATCCGGAACGTTATAAGTTCCATATGCGAGGGCACGGAAATATGCCCATATTCATGTGCGAACTGTGCAACAAGACATTCAGCGACTCCAGCAACTTCGCCAAGCACAAAAAGACCCACAACGTGCGCTGCCTCGTGTGTGACATCTGCAAGAAGAAGTTCCATTCCAAGGCGGCGCTCGAGAAACACATTGGGGAACATTATTCGTTGCCGATGACGACATGCATGTTTTGCCCGAAGACTTTCCACTCTAAGACAACATACAAGAAACATAAATATCAAGTCCACCAGAAGCCTAGATATAGATGTATACTCTGCGACATGTTTTTCGCGACCAGTCAGATTAAATGGGACCACGATTGGGAGGTGCACCAAGTACGGAAGCACGTAGCCGACTGCCCCATCTGCAAGAAGTCATTCCGCAAGTTCTCCGACGTCAAGGTTCACGCCCGTTCTGAGCACAACGCTAAAATCAGATCTATGAACTGTGGCGAGAGTACGGACAAGAAGAAGATAAAGCTATCCAAGGATCTGAAGGAGAAGGAGAAATAG
- Protein Sequence
- MSESRKRSRKSKIEIREDDCELEVVCADVNSDVQHLQLAEPPRIAPKRPKKVEYYPEVPVIPDHDYCWPFTASKPITYSKFDKPDHIKLPKRTGTTIDGLTKTPQGPSLNQIKIKVDRYILPKFHFKGGVLQKMENIKKYKGKDNGKMRMCKYVPELLFKESKKIAETSDNFADKILDVEMRNQWGNVLYTPNKVPAQDLKLQAAICTWQAWYNGSRLVREAPLFYQCHICEQAWWRLQPFRDHIRQHDGSKLIISMKEHLHESFIIASYEIVNKLIYIPIDGNCYRCGEDVEFHKANCLAYSCSRCSRSAYTCTGLRYHESICLYVNLVMYNISIDRQCTLCKHVLNSVSLVEKHMIEAHSVRSDIPVHNSFKNCVSCGEKYFTFTMHNCCKSGRNCSCEHCCRKFASTKLMLNHSLSCHNRPVCCRICNMQLKAKCQEMEHLVENHTSSYRLVFKCTGCCTSNVLFMNEKSFNLHRQLEHQRKVDRRRLFFEKMLVPKSCLDDDYEEEATLIVVDPSLPSKSFSDLAADVKVTVDEIDVKKEPVDMDENEEVDYEEMLLKMFNQSPQKPVSNDKVINTDNNTAGANNRIEEYKTEEDREAFKFDHVYKTEDTTEFDYGSVKVKAEPIDDIDIIENPVEEVQIKTEPVDPSEIDEEMMNVCYDYGEATVKIERNYEPDDFSINEPTSSRDVTSGKVETSFKDVTSGKVETSSKDPTSNVVTDNEDELIIKEEFDDTITVKTDDTSTSSEPFHELLTELDMFRDDKKKKKKKFNYEYSIEVIDAKGKLKQRKMYTCRKCGYTAHHKKYKKHMDTTCLVSPGVNCSYPCSICGLTFVMFKTYVLHFEKHGYDLMCCFICGARFSEEFKFLKHMHKHVKSSYVGVHLLDKSGEEIKRSQKRVTCMNCKETVEQDTMFSHWEKLHLQLKEIRSDDEEPRLVIKEEPAPELTVDCERVTMNNKELEPAMLKLATENLQLDSNEKECIICYRVFSRRYDLKRHIVEHLLMDAHMKKIKYRDFRCQICSEGFPHPERYKFHMRGHGNMPIFMCELCNKTFSDSSNFAKHKKTHNVRCLVCDICKKKFHSKAALEKHIGEHYSLPMTTCMFCPKTFHSKTTYKKHKYQVHQKPRYRCILCDMFFATSQIKWDHDWEVHQVRKHVADCPICKKSFRKFSDVKVHARSEHNAKIRSMNCGESTDKKKIKLSKDLKEKEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00696948;
- 90% Identity
- iTF_00696948;
- 80% Identity
- -