Edod009641.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eupithecia dodoneata
Gene Symbol
-
Assembly
GCA_947044255.1
Location
CAMRHC010000050.1:766528-769889[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.67 41 5.2 3.0 1 23 244 267 244 267 0.96
2 16 0.14 8.3 7.4 3.4 1 23 272 295 272 295 0.95
3 16 0.071 4.3 8.3 0.3 1 23 325 348 325 348 0.96
4 16 0.00021 0.013 16.3 1.4 2 23 409 431 408 431 0.96
5 16 0.00011 0.0066 17.2 1.3 1 23 437 460 437 460 0.96
6 16 0.0023 0.14 13.0 0.8 2 20 464 482 463 482 0.95
7 16 0.016 1 10.3 0.7 1 23 492 515 492 515 0.94
8 16 0.0019 0.12 13.2 1.5 1 23 520 543 520 543 0.96
9 16 0.00071 0.043 14.6 0.3 2 23 556 577 555 577 0.96
10 16 0.091 5.5 8.0 3.3 1 23 583 605 583 605 0.97
11 16 2.6e-05 0.0016 19.1 0.1 2 23 642 663 642 663 0.97
12 16 8.1 5e+02 1.8 0.4 3 23 669 689 667 689 0.87
13 16 0.18 11 7.0 1.2 2 23 706 728 705 728 0.94
14 16 0.0006 0.037 14.8 1.7 1 23 734 756 734 756 0.99
15 16 0.0011 0.067 14.0 6.3 2 23 763 784 762 784 0.96
16 16 0.0063 0.39 11.6 1.9 1 23 790 813 790 813 0.96

Sequence Information

Coding Sequence
ATGGAGGCACCCGCGAAGAGAAGCCTGCAAGAGCAGCTCAGTACAGAATGGCTAAAACAGCACTTGAGGACAATTTTTCACTCACCTCAGTACTGCTCCTTATGCCTCAAAACAGTTGGAGATTTCTACTCACTCGACAAGATGTTCGCAGCCAATGAGGAGATATGTATGAGGCCGCTGAGAGAAGTGGTCAACTACGTTTTCAATTTTGATGTTGAGGAGTTCATGCCAAGTAATGTGATCTGCGAGCAATGTACTGAGAAGACAATACAATCTTTTATATTCATCTCAAACACAAAGAAATCATACCAAATAATCAGAAACTGTTTAAACGATTTGGAATCCAAAGTTGTAGACCTAAGCTGCACATTAGATAATGAAAATAACTATGAAAACTCTAACATAATGATTGTCATTGAATATGATAGCGAGACATGTAACCAATTGAAAGAACTGAATGCCGGGTGCAACACTATCCTTACAGACAAACCTATTACCAAAAATATAGAAGTACCTGTCAAACACATAAACAAAGAATTTACAGAAAATAATGACCCGGTTATAATACCTACACCAAGAGTGGAAAAGTACCCTAGAACCAATACTGCAAAGAAAAATACTGCTGTAGAAAAAAAGGTGCCAACTCCTAATGTGACACTTAAAGAAGGCAAAATTGTTATAGAGCCTCTGGTTACAAATGCGATGCCAGTATCGCCAAGATTTAACACCTACTGTTGTACTTCCTGTGAAGATATATTTACAAGCTACCGATCTTTGAAAGAGCATGAAAAAGTTAAGCATAACTCTATTATTTTCAAATGCAGGTTTTGTGATAAAATCTACAACACCCAACAGTATTTAGACTTTCATTATCGGTCAATGCATGATCAATCTCGATGCAGATTCTGTCATGATCTATTCATGGCTGGTAAACTAAATGAACATCTAAAAGAGATGCATGGAAATAACATCTACAGCTGTGGACAATGTGAATTGGTTTATTATGCAAAAGAGCAATTAGACACACATTATAGAGCAACGCACGGAAAATTAATAGACAAAAATAGCAAGGTCTGTGTTATGTGTTTGAAGAACATATCAGAATCAGAAGAAAGCAGTCACAAATGCAAATTTTCATGCCTAGAGTGCCTTAAGTCACCGTGCATCCATTATAACTATTTGATGTCGTACCGAGAACAGATCTTGAATCAATCAGCGTTAATACAGTGTCTGGATTGTGACTACACAACTAAAAGAAAGGAACATCTTATAACGCATGTCAACCGTGAACACTTAGATCACCATCCTTTCACTTGCGGTGACTGTGGTACACAGTTCTACACTAAATTGTCTCTTAAAACTCACATAATGCAGTTCCATCAAGATCTGAAATGTCAGTACTGTGATGCCAATTTCAAGACCACAACACTCTTGCAAAGGCATCGCCCAGCTTGTAAGCTAATCAGTCGTTTACATGAATGCCCAAAATGTGTAGCATCTTTTGACACAGTCGAAGACTTGGACAGGCACACCAAATTTAGCCATAGTGAAATTGTGTTCCCTTGTTTGCGTTGCAACAAAGAATTTAACCTGAAATCTGCATTACAAGACCACCATCTGAAGGTGCACACTAGAATACAAAGAAAGAAGAGACGGAAGATTATAGAATGTACCTTATGTGATATAACATTCAGAAACCTCAAGGAAATGATTAAGCACGAGCAGTCTCATGAACCAGGGGAGGTATACCCCTGCAAAGTGTGCCCCAAATCTTACCACAGTCTAAAAAAAGTATACATGCACAAGCAAAGGCATTATGCACAGAAAATTAATTGTCCAGGCTGTAAAAACACAGTTATTAGCTCATACTACAAACAGCACAAGTTACGCTGCACATTCATCAAAGAAGACACCGACGTGAACGTTTGCGACGTCTGCGGCAAGGCTTACTCAACAGAAGTTGGTTTAAAAACGCACCAGCTAACCCACTCAAGCCCTATACCATGTATACATTGTGGGAGGCGGATCAAACCGACATCCATGAAGCGTCACCTAGAAATATGGCACTCCAGTTACATTATCTTCGACGAGACAAAAACTAAACATCTCTTACTTCACTGCGATGCCTGTAGCTACGTAACCCGAAAGAGAAGCGACTATGAGAACCATGTAAACAAAGTTCACTTACAGATCAAGCCATATAGCTGTGATATATGTGCAAAACAGTTCTGTGGTAAGTCTAGGCTCGCTGAACACTTGAAAACACATTCCACTGACCATACCTGTTTCTGCCCAACATGTAATAAGAAATTTGCCAACAAAGTCTGTTTGAAAATGCATGTCAGACGTCACACCAATGAAAATCCTTATGAATGCAACATTTGCTCTGAAAAGTTCCGTTCTTCGAGTATAATGAAAACTCATCGATTAAAGAAACACCAGGATAAGACCATATCCTGTCCGTTGTGTGATGCAATGTACCATTTAGTGGCAGAAATGAGGTTCCATGTAAAGAAAACTCATTGGAAGAGTCCGGAACCGTTTGATTATAAGAAAATCGTTTCTGAGGAGTATTATCATTTGTTCCAAGATAGGAGACTGCAAAAACTTGGTGATGAAAATGCGTTACTAACTGGTTATATCCTAAAATAG
Protein Sequence
MEAPAKRSLQEQLSTEWLKQHLRTIFHSPQYCSLCLKTVGDFYSLDKMFAANEEICMRPLREVVNYVFNFDVEEFMPSNVICEQCTEKTIQSFIFISNTKKSYQIIRNCLNDLESKVVDLSCTLDNENNYENSNIMIVIEYDSETCNQLKELNAGCNTILTDKPITKNIEVPVKHINKEFTENNDPVIIPTPRVEKYPRTNTAKKNTAVEKKVPTPNVTLKEGKIVIEPLVTNAMPVSPRFNTYCCTSCEDIFTSYRSLKEHEKVKHNSIIFKCRFCDKIYNTQQYLDFHYRSMHDQSRCRFCHDLFMAGKLNEHLKEMHGNNIYSCGQCELVYYAKEQLDTHYRATHGKLIDKNSKVCVMCLKNISESEESSHKCKFSCLECLKSPCIHYNYLMSYREQILNQSALIQCLDCDYTTKRKEHLITHVNREHLDHHPFTCGDCGTQFYTKLSLKTHIMQFHQDLKCQYCDANFKTTTLLQRHRPACKLISRLHECPKCVASFDTVEDLDRHTKFSHSEIVFPCLRCNKEFNLKSALQDHHLKVHTRIQRKKRRKIIECTLCDITFRNLKEMIKHEQSHEPGEVYPCKVCPKSYHSLKKVYMHKQRHYAQKINCPGCKNTVISSYYKQHKLRCTFIKEDTDVNVCDVCGKAYSTEVGLKTHQLTHSSPIPCIHCGRRIKPTSMKRHLEIWHSSYIIFDETKTKHLLLHCDACSYVTRKRSDYENHVNKVHLQIKPYSCDICAKQFCGKSRLAEHLKTHSTDHTCFCPTCNKKFANKVCLKMHVRRHTNENPYECNICSEKFRSSSIMKTHRLKKHQDKTISCPLCDAMYHLVAEMRFHVKKTHWKSPEPFDYKKIVSEEYYHLFQDRRLQKLGDENALLTGYILK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00706288;
90% Identity
iTF_00696806;
80% Identity
-