Basic Information

Insect: Eupithecia dodoneata
Gene Symbol: -
Assembly: GCA_947044255.1
Location: CAMRHC010000120.1:419279-429563[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.16 9.9 7.2 3.3 1 21 148 167 148 168 0.93

2 13 2.9e-06 0.00018 22.1 1.2 2 23 198 219 197 219 0.97

3 13 0.0028 0.17 12.7 0.5 1 23 225 248 225 248 0.96

4 13 7e-06 0.00043 20.9 1.2 1 23 254 277 254 277 0.97

5 13 4.3e-05 0.0027 18.4 1.0 1 23 282 304 282 304 0.97

6 13 3.3e-06 0.0002 22.0 2.3 1 23 310 332 310 332 0.96

7 13 9e-05 0.0055 17.4 4.3 1 23 343 365 343 365 0.98

8 13 0.00028 0.017 15.8 1.3 1 23 370 392 370 392 0.98

9 13 2.2e-06 0.00013 22.5 0.9 1 23 398 420 398 420 0.97

10 13 0.00022 0.014 16.2 2.9 1 23 426 448 426 448 0.95

11 13 2.3e-07 1.4e-05 25.6 0.5 1 23 454 476 454 476 0.98

12 13 0.052 3.2 8.7 9.2 1 23 482 505 482 505 0.97

13 13 9.5e-07 5.8e-05 23.6 4.2 2 23 511 532 510 532 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.16	9.9	7.2	3.3	1	21	148	167	148	168	0.93
2	13	2.9e-06	0.00018	22.1	1.2	2	23	198	219	197	219	0.97
3	13	0.0028	0.17	12.7	0.5	1	23	225	248	225	248	0.96
4	13	7e-06	0.00043	20.9	1.2	1	23	254	277	254	277	0.97
5	13	4.3e-05	0.0027	18.4	1.0	1	23	282	304	282	304	0.97
6	13	3.3e-06	0.0002	22.0	2.3	1	23	310	332	310	332	0.96
7	13	9e-05	0.0055	17.4	4.3	1	23	343	365	343	365	0.98
8	13	0.00028	0.017	15.8	1.3	1	23	370	392	370	392	0.98
9	13	2.2e-06	0.00013	22.5	0.9	1	23	398	420	398	420	0.97
10	13	0.00022	0.014	16.2	2.9	1	23	426	448	426	448	0.95
11	13	2.3e-07	1.4e-05	25.6	0.5	1	23	454	476	454	476	0.98
12	13	0.052	3.2	8.7	9.2	1	23	482	505	482	505	0.97
13	13	9.5e-07	5.8e-05	23.6	4.2	2	23	511	532	510	532	0.97

Sequence Information

Coding Sequence: ATGTGCTACGTGTGCTACTGGCAGCTGCAGCGATGTCGGAAGTTTGTGCACATGGCACACAGGTCCAACAATATCCTGCAGGATATAGCCAGCATTGGGCTAGAGgtAACACAAGAAACATTGGTATTGTTAAACATAAAAACTATTCAAAATCTgactatacaaacaaaaatagcCTCTACAGACCATGATACTGATGAAATAATCAAACACGTTGCTGTGAAGCAGGAATCTATCGTAGAAAATCATGATGATGACATCTTTCCAGCTGAGaataatgatgattatattcCAAGGCATGGTTTAGAACTACTTAATGTAGCGAAAACGGAAGATACCGGttttgatgacgatgatgacacaAAACCTCTGATAGAAGAAGGTAAATCATACGTTTACTGcgaaataaaaactacaacacctgagaaagttaaaaaaaaacacaaatgcAAAGCTTGCAATATAAGATATAGAAAAAGCGATTTAGAGAAACATAAATgcgtaaaaactaaaaagaaacCGCCTAAGAACGCTAAACTCCCcgacaatataaaaaagaaagttaAAAGGAAAATAGAACCAGAGGATTTGACTTGTGAATTATGTAATAAGACATTTAGCGATAAATACGTATTAagaaaacatttgaaaataCATTCCGGTGAAAAACCATACGTATGTAACAAATGCAACCGAGCATTTCTCCTACCTTCATACTTAAAAGACCATGTGCTACGAACACACTCCGAAAACAAAGAGTATGCATGCTCAGAATGCAGTAAAACCTTCTCAGTTAAAAACACATTGTTAAAACACATCAAACGACTACACAGCGGCAAGACCCACACCTGTGATCGCTGTGCACGCGCTTTTAACAACAACAGCGACTTAAAGTCCCATATGGTCGTCCACAGCAGCGAGCGACCACACGTCTGTCCCACCTGTGGGAAAGCTTTTAAGAGGAAGAATCAATTGAATGAGCATTTTAAGTTGCATAGTGACCAGAAGCCTAAGAAGACGGAGCTACATGAATGTCCACATTGTAGTAAGAAATATACACTGAGAGCGAGCTTGTTCAATCATATGAAGATACATACGGGCATGTTGTATACTTgtgatagATGCGCAGTCTCATGCCGCGACCGCAGCACCCTAAAGATCCACATGCTGATCCACTCGGACGCGCGCCCGCACTCGTGTCCCACGTGCGGGCGCGGCTTCAAGCGCAAGGGCCAGCTGAACGAGCACGCGAAGGTGCACTCCGGGGCGCGCCCGCACGCCTGCGACCAGTGTGACAAGACCTTTACGCAGAAGGGCTCGCTCAACTTTCACAAGAGGGTGCACACGGGCCAGCGGCCGTTCATCTGCGAGGTGTGCGGCAAGACGTTTGACAGCAAGTACAACATGGCGAAACATCTGCGCATACACACCGGGGAACGGCCCTACCACTGTCACAGCTGTTCGCTGCGCTTCACGCACGCCAGCAGCCTGCACGACCACGCGCGCAAGTACCACGGCGGAGAGAAGCTCTCCTGCGACGAGTGCTACAAGAGCTTCATACACAAGAGCACGCTCAAGAAACATATGAAGACACATGCGAGGgagaaataa
Protein Sequence: MCYVCYWQLQRCRKFVHMAHRSNNILQDIASIGLEVTQETLVLLNIKTIQNLTIQTKIASTDHDTDEIIKHVAVKQESIVENHDDDIFPAENNDDYIPRHGLELLNVAKTEDTGFDDDDDTKPLIEEGKSYVYCEIKTTTPEKVKKKHKCKACNIRYRKSDLEKHKCVKTKKKPPKNAKLPDNIKKKVKRKIEPEDLTCELCNKTFSDKYVLRKHLKIHSGEKPYVCNKCNRAFLLPSYLKDHVLRTHSENKEYACSECSKTFSVKNTLLKHIKRLHSGKTHTCDRCARAFNNNSDLKSHMVVHSSERPHVCPTCGKAFKRKNQLNEHFKLHSDQKPKKTELHECPHCSKKYTLRASLFNHMKIHTGMLYTCDRCAVSCRDRSTLKIHMLIHSDARPHSCPTCGRGFKRKGQLNEHAKVHSGARPHACDQCDKTFTQKGSLNFHKRVHTGQRPFICEVCGKTFDSKYNMAKHLRIHTGERPYHCHSCSLRFTHASSLHDHARKYHGGEKLSCDECYKSFIHKSTLKKHMKTHAREK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00701289;
90% Identity: iTF_00696660;
80% Identity: -