Edod010496.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eupithecia dodoneata
Gene Symbol
-
Assembly
GCA_947044255.1
Location
CAMRHC010000054.1:4647830-4661462[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0001 0.0064 17.2 0.1 3 23 126 146 125 146 0.97
2 18 9.5e-07 5.8e-05 23.6 1.2 1 23 152 174 152 174 0.99
3 18 5.9e-06 0.00036 21.1 2.7 1 23 180 202 180 202 0.99
4 18 5.2e-06 0.00032 21.3 2.4 1 23 217 239 217 239 0.98
5 18 0.00015 0.0093 16.7 0.6 1 23 254 276 254 276 0.98
6 18 5.4e-05 0.0033 18.1 3.1 1 23 291 313 291 313 0.98
7 18 6.7e-07 4.1e-05 24.1 1.5 1 23 328 350 328 350 0.99
8 18 0.00017 0.01 16.6 2.8 1 23 356 378 356 378 0.98
9 18 7.5e-07 4.6e-05 24.0 1.5 1 23 384 406 384 406 0.99
10 18 0.038 2.3 9.2 1.8 1 23 413 435 413 435 0.98
11 18 6.4e-07 3.9e-05 24.2 2.3 1 23 441 463 441 463 0.99
12 18 0.044 2.7 9.0 1.8 1 23 470 492 470 492 0.98
13 18 2.6e-06 0.00016 22.3 1.5 1 23 498 520 498 520 0.99
14 18 0.00049 0.03 15.1 0.7 1 23 527 549 527 549 0.99
15 18 2.9e-06 0.00018 22.1 1.9 1 23 555 577 555 577 0.98
16 18 0.0021 0.13 13.1 0.3 1 20 583 602 583 605 0.93
17 18 0.00017 0.01 16.6 1.5 2 23 612 633 611 633 0.96
18 18 3.7e-06 0.00023 21.8 1.4 1 23 639 662 639 662 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAAATCAAAGCTGAACCCATgaaCTTTTACCACCCACACGTCCCCCACGTGCACCCTGGGCCGCCGACGATAGGGCGCTCGGAGTCCAACCACCACCTCATGAACCCGCATCACCACGAAGACTCCAAGGACAGCCTCATACAACATCAAGTACAACACCAGCAGGATCTCATGGAACAACATCAGCAACAGGAAATGCAACAAGATGATGAGCTGAGCTTCAAAGGAATGGAAGATGAAGGCGTGGATATGGATATGGACGGCAGACAGTGTTCAcagGGTCTGGTGGTAGATATGGGTGCAGTTCAAACAAAAATGGAGGTCAATGGCGGTCAATCCACACCAAGATCTAAGCCACAGGCCTGTAAGGTTTGCGGCAAAGTCCTTTCGTCCGCTTCTTCATATTACGTCCACATGAAGCTTCATTCGGGAAACAAGCCTTTCCAATGCACAGTGTGCGACGCTGCGTTTTGCCGGAAGCCTTACCTCGAAGTCCATATGCGCACGCACACAGGCGAACGCCCGTTCCAATGTGATTTGTGCCTAAAGCGCTTCACACAGAAGTCAAGTTTGAATACGCACAAACGAGTGCACACGGATGAGCACTTGCACGCGTTGGTGGTGAAGGACCGGCCCTACAGGTGTGAACTCTGTCAGATGCGGTTCACGCAGAGTTCCAGCCTCAACCGACACAAGAAAATACACACGGAGGAACACAGACGCGCTCTGCTGGTCAAGGATCGGCCCTACCAATGCGGAATCTGCTTTGTGAGATTCACCCAGAGATCGAGTTTGGGCCGGCACGGGAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTCGGACGTCATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGTCCGTATCAGTGCGACGTCTGTGACAAGCGGTTCACGCAGAAATCCAGCCTTGGTACTCATAAGCGTATACACACTGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGGCGAGCGGCCCTATCAGTGCGAAGCCTGTCTCAAGCGATTCACGCAGAAGTCGAGCCTCAATATACATATGAGGACGCATTCAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATTCACACGCGCACGCACACCGGAGAGCGCCCCTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCACTCAGTACAAGGCCGGCCCTTCCAATGCCTGCAGTGCCCGGCCGCGTTCACCTGCAAACAGTACTTGGAAATTCACAATCGCACGCACACGGGAGAGCGCCCCTACCAATGTGACGTTTGCCTCAAACGGTTCGCTCAGAAGTCCACACTCAACATTCACAAACGAACGCACACAGTGCAAGGGCGGCCGTACCAATGCATGGAGTGCCCAGCCGCGTTCACTTGCAAGCCGTATCTGGAGATTCACATGCGCACGCACACCGGGGAGCGCCCGTTCGAGTGCGATGTCTGTTACAAACGGTTCACGCAGAAATCTACGCTCAACATCCACAAGCGAATTCACACGGGTGAACGCCCATACGCTTGCGATATTTGTCAGAAGCGTTTTGCTGTGAAGAGCTACGTAACAGCACACAGATGGTCCCACGTCGCAGACAAGCCTCTGAACTGCGACCGCTGCTCGATGACGTTCACCTCCAAGACCCAGTTCGCGCTGCACATCCGCACGCACACGGCCGGCCCGTGCTACGAGTGCAGCGTGTGCGGTCGGACCTTCGTCAGGGACAGCTACCTTATACGTCACCACAACCGCGTTCACCGCGACAACCACAGCAACATGTCAGCCAATAGCATCGGCAATTTGAACTCCGTCGCTACCAACACCAACAacggcgggttcgattctcccGGCGTCTGTGATTTAAGCTTTGTCCCGATGGTGAACCGTTACATGACGTCACAAGGCACCCAGGTGTCGATGCAAGATGTCCAGAAGATGCAGGCAATGTCGCCGCAATCCATCGCCTCTATTTCCTCGCCCCCGCCACCTCATACGCCGACGCCCCAGCCCCAGATGTCTGGCCCACTGCACATGGCAGACTGA
Protein Sequence
MFEQQIKAEPMNFYHPHVPHVHPGPPTIGRSESNHHLMNPHHHEDSKDSLIQHQVQHQQDLMEQHQQQEMQQDDELSFKGMEDEGVDMDMDGRQCSQGLVVDMGAVQTKMEVNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHLHALVVKDRPYRCELCQMRFTQSSSLNRHKKIHTEEHRRALLVKDRPYQCGICFVRFTQRSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDVCDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCEACLKRFTQKSSLNIHMRTHSVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKTQFALHIRTHTAGPCYECSVCGRTFVRDSYLIRHHNRVHRDNHSNMSANSIGNLNSVATNTNNGGFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDVQKMQAMSPQSIASISSPPPPHTPTPQPQMSGPLHMAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_00737671;
80% Identity
-