Ecen018810.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010001024.1:743019-758994[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.8e-05 0.0022 19.1 2.0 1 23 299 321 299 321 0.99 2 11 1.3 1e+02 4.4 1.2 1 23 356 379 356 379 0.94 3 11 0.076 6 8.3 2.5 1 23 445 467 445 467 0.98 4 11 0.016 1.3 10.4 3.9 2 23 476 498 475 498 0.96 5 11 0.00064 0.051 14.8 2.5 1 23 529 552 529 552 0.96 6 11 0.014 1.1 10.6 2.3 1 23 556 579 556 579 0.93 7 11 0.053 4.2 8.8 0.0 3 20 599 616 598 618 0.94 8 11 0.58 46 5.5 0.1 3 23 682 703 681 703 0.89 9 11 2.1e-05 0.0016 19.5 0.6 1 23 712 734 712 734 0.98 10 11 0.0029 0.23 12.8 1.1 3 23 742 762 740 762 0.96 11 11 9.2e-06 0.00073 20.6 2.7 1 23 768 791 768 791 0.98
Sequence Information
- Coding Sequence
- ATGTGGGACGTTAAAGCCTGTGCTGTGTGTCTCAGCACCAGCAATAAGCTTTACAGCTTGAACTCTGGCAATTTACGCCATGAATTCAACTGTGTTTCCGGTCTGAAGACTTCTCCAGGTAGCGGTCTGCCTGATTACTTGTGCATAGAATGCCTTGCTTATGTAAAGAAATTCATAAGATATAGGCAAAGATGCCATCGGGCCCATTACACTTTAAAACAACTGCTGAATAGCAATAAAGAGatCAAAGAGTTCCACTTAAACTCAATAGACAGAGAGAAACTAGGTATCTCATCACCTCTATCATTCATTGATAAAGCCCGTTTTCACTGTGAAACTCTCATTTACCAGTGGCCTGAAGCAGACTATAGTTCTACTCATCAGCCAAGAATCAGCTACGATGTACCTATTCTTCATTATAGCACACTATCTAAAGAAGAAACGTTTGAAGATGTCATGACTTTGTCTGCATGTGATAATGATAGAACTGTCAAAGTTGAGCCTGATAAAGCAGATTTAAAAACAACCCGGAGAAAGAAAAAACGTGAACCGAAAGCTTTAAAAACTGATATAACAACACTTTTAGAAGACAAGAAATATTCAATTGATAATGATTATTTAGCATCTAATTTTCTTCAATCAAATGATTTAGATTATGATAATGGTCTGGATAATGATGATGGTCTGGATAATGATAATAGTCTGGATAATGATAATAGTCTGGATAATGGTAATGACATGGTTCATGATAATGATGTATTTGTTGATTCATGTAAACTAGATCTTAAAGCAGATGGTACAAAGTTCAATGAAGAATATGCAGAAATGGTTCCAATATCTGTCACAGAAGCAAGAGCAGTACTTGAAGTCAAAAAGATGTTTAAGACAGGACCTTATAAGTGTAAGGGCTGTGGACTATCATTTAAGATTAAGAAGTACTTAAAAATACATTCAAGAATGCATGATATGCATTTGAAAGGCAACTACCACTGTGAACTGTGCAACTTTTACTACAAAACTCAGTTCCTTCTGGACTGTCACATGACTGAGAAACACATGTACAAGTATGTGTGTAGGATGTGCCCTGAAGTTAGTTTCGATCGAGCATCAGCAAAAACACATTACTGCTTGCGCCACTTGGGTGGTCGAAATTGGGAAGGACAAACTCGACCAGTTTGGCTTAAACCGAAGAAGGAAATCAAGCCGAAAGGGAAACGCAACGTTGCCATTCATATACCTAAAGAGGCCTTCTTATGTGAGCTTATTAAACCAGAGGAGCAGTACTCTATGATCAGGGATCGCAAGTCCAGTCGTAATTATTTAGAGGCGAAATACAAGTGCGAATTTTGCTATAAGGGATACAGACTTTTGACGACGTATAGCAACCATATGGTGAAACATAACTCGTCAATATCCGGCAACCTCCAATGCGACATATGCAAGCTGTACTTCCGTGACCAGCGTAAGATGTACAAGCACATGACCATGTGTCACCTGTACAAGTTCAGCTGCCAGTGCTGCGACGCCGTCTTCACTTGTCGGAGTCAGGCGATAGCGCACTACAAGTGGCACGACAATGTTACATACGACTGCGAGCACTGTGATAAGAAGTTTGTGAAGGCTTCCACCCGACTGACCCACATCCGCCTAAAGCACCCTTCCACATTCGTATGCAACCTTTGCGGACACAGCTTCGTGAGCTCGGCTGGACTCACCTGTCATAAACAGATCACGCATTCTAAGGAGGAAGTAACACAAGCTGAAGGTGAAGTAGACCCGTCTAACCCCAACTTCTGTGAAGACTGCAATATTGTGTTCGCGAACGAGCAAGCTTTTATGACGCACCTCGGCAGCTCTAAGAAACATGTCAAGACCAATATATCTGTTCAGAAAACCCAGCGCGACTCCCGCAAGCGAATGCGACGCGAGATGGGGTCAAacccgcgcgcgccgcgcaaGCTGGGATCATCCGCGTCGCCCGAGAAACGTGGTCGAAACGGCACCTCGGAGGTACTCAACACTGGAGTCACCACGGCCAACAACTGCGAGGTGTGCGGTAAGTTCCTCGTGAACGACGTGCAAGCCCGGAGACACTACGAGGCGGAACACCCCGGGGCTGACTTCCTGCGGCGCTACATGTGCGAGGTCTGCGGACACACTGCCAGGCAATACGCGAATCTCCTAGTTCATATGCGAACTCACACCAACGAGAAGCCGTACGGATGTCCGCACTGCGATAGAAGGTTTAGCATGCTGAGTAACAGAGACAGACATCTTGTGGTACACACGGGTGAAAAGCGCTTCCAATGTCAGCACTGCAACCGTCGCTTCACTCAGAGCAGCGCGGTGAAGCTCCACATACAGACGGTCCACCTGAAGATACCCTACGCGCCCTGGGACAAGAAGAACAGGAAGCGGAGGAAAGAACTGGAAGCGGCAGGAGTCTCATCAGATATAAACTTGGTAGAAGCGCCGCCAATGCCCATAATGCAAGCCCCGCAACCAAAATTACTTCTCGACCCACAAGCTGAGTTCATTGCTTATAGTGCCTGTATTACTTTCGCTGATGAATGA
- Protein Sequence
- MWDVKACAVCLSTSNKLYSLNSGNLRHEFNCVSGLKTSPGSGLPDYLCIECLAYVKKFIRYRQRCHRAHYTLKQLLNSNKEIKEFHLNSIDREKLGISSPLSFIDKARFHCETLIYQWPEADYSSTHQPRISYDVPILHYSTLSKEETFEDVMTLSACDNDRTVKVEPDKADLKTTRRKKKREPKALKTDITTLLEDKKYSIDNDYLASNFLQSNDLDYDNGLDNDDGLDNDNSLDNDNSLDNGNDMVHDNDVFVDSCKLDLKADGTKFNEEYAEMVPISVTEARAVLEVKKMFKTGPYKCKGCGLSFKIKKYLKIHSRMHDMHLKGNYHCELCNFYYKTQFLLDCHMTEKHMYKYVCRMCPEVSFDRASAKTHYCLRHLGGRNWEGQTRPVWLKPKKEIKPKGKRNVAIHIPKEAFLCELIKPEEQYSMIRDRKSSRNYLEAKYKCEFCYKGYRLLTTYSNHMVKHNSSISGNLQCDICKLYFRDQRKMYKHMTMCHLYKFSCQCCDAVFTCRSQAIAHYKWHDNVTYDCEHCDKKFVKASTRLTHIRLKHPSTFVCNLCGHSFVSSAGLTCHKQITHSKEEVTQAEGEVDPSNPNFCEDCNIVFANEQAFMTHLGSSKKHVKTNISVQKTQRDSRKRMRREMGSNPRAPRKLGSSASPEKRGRNGTSEVLNTGVTTANNCEVCGKFLVNDVQARRHYEAEHPGADFLRRYMCEVCGHTARQYANLLVHMRTHTNEKPYGCPHCDRRFSMLSNRDRHLVVHTGEKRFQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKELEAAGVSSDINLVEAPPMPIMQAPQPKLLLDPQAEFIAYSACITFADE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00701451;
- 90% Identity
- -
- 80% Identity
- -