Ecen012163.1
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- -
- Assembly
- GCA_944548335.1
- Location
- CALYMU010000814.1:370543-374098[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.2 93 4.6 2.9 1 23 244 267 244 267 0.93 2 17 0.26 20 6.7 2.8 1 23 272 295 272 295 0.95 3 17 0.022 1.8 10.0 0.4 1 23 325 348 325 348 0.95 4 17 0.00022 0.018 16.3 1.4 2 23 409 431 408 431 0.96 5 17 0.0001 0.0078 17.4 1.5 1 23 437 460 437 460 0.96 6 17 0.00079 0.062 14.6 0.8 2 20 464 482 463 482 0.95 7 17 0.01 0.81 11.0 2.0 1 23 492 515 492 515 0.95 8 17 0.00029 0.023 15.9 1.2 1 23 520 543 520 543 0.95 9 17 0.011 0.88 10.9 0.1 2 23 556 577 555 577 0.93 10 17 0.031 2.5 9.5 1.5 1 23 583 605 583 605 0.97 11 17 2.3 1.8e+02 3.6 0.1 3 16 612 624 610 630 0.72 12 17 0.0001 0.0081 17.3 0.2 3 23 643 663 642 663 0.97 13 17 0.56 44 5.6 0.5 2 23 668 689 667 689 0.93 14 17 0.11 8.8 7.8 1.1 2 23 706 728 705 728 0.94 15 17 9.4e-06 0.00074 20.6 1.4 1 23 734 756 734 756 0.99 16 17 0.00077 0.061 14.6 6.7 2 23 763 784 762 784 0.96 17 17 0.0068 0.54 11.6 1.9 1 23 790 813 790 813 0.96
Sequence Information
- Coding Sequence
- ATGGAGGAGTCGACTAAAAGAAGCCTACTAGAGCAGATGAGCATAGAATGGTTAAAACAGCACTTGAGGACAATATTCCACTCCCCGCAGTACTGTTCCTTATGCTTCACAACAGATGGGGAGTTCTACTCACTCGACAAGATGTTTGCAGCCAACGAGGAGCTATCGACGAGGCCGCTTCGAGAAGTCATCAACTATGTGTTTAATTTTGATGTTGAAGAGTACATGCCAAGTAACAATATCTGCGAACAATGTACTGAGAAGACCATACAATCTTATATATTCATCTCAAACACCAAGAAATCATATAAAATACTCAAAAACTGTTTAAACGATTTGGAATCCAAAGTCGAGGACATAAGCTGCACATTAGATCATCAAAACGACTATGAAAACTCAAACATAATGATTGTCATCGAATATGACGATGAGACGTTTAACCAGTTAAAAGAACTGAATGCTGGATGCAGCACTATACTTACAGATAAacctataattaaaaataaagaaataactgTTGAACACATGAAGAAAGAATTTAAAGAATACAATGGCCCGGTTATAATACCTACAGCAAGAGTGGAGAAATACCCTAGAACTAATACAGCAAAGAAAAACATTGCTCTACAAGAAAAAGTACCCACTCCAAATGTAACGCTTAAAGAGGGCAAAATTGTCATAGAGCCTCTAGTTACTAATGAGATACCAGCTTCTCCACGGTTTAATACCTACTGTTGTACATCTTGTGAAGATATATTCACAACCTACCGATCTCTGAAAGAGCATGAAAAAGCTAAGCATAACACAATAATTTACAAATGCAGGTTTTGCGAGAAAATCTACAACACCCAACAGTATTTAGATTTTCATTATCGGTCAGTGCATAATAAATCTAGATGCAGATTCTGTCAGAATCTATTCACAGTAGATAAACTAAATGAACACCTAAAAGTGATGCACGGAAATAATATCTACAGCTGCGGGCAATGTGAGTTAGTTTACTACTCAAAAGAGCAGTTAGACACTCATTCTAGAGCCACTCATGGCAcattaatagataaaaatagCAAGCTATGTGTCATGTGCTTAAAGAACATTACAGAAACGGAAGTTAGCAGTCACAAATGCAAGTTTTCATGCCTAGAATGCCATAAGTCACCGTGTATCCATTATAACTATCTAATGTCATACCGAGAACAGATCTTGAACCATGCAGCATTTATACAATGTCTGGATTGCGACTACACAACGAAGAGAAAGGAACATCTTATAACTCATGTTAATCGAGAACATTTAGATCACCATCCCTTCACTTGTGATGACTGTGGAACGCAATTCTATACTAAATTATCTCTTAAAACTCATATACTTCAGTTCCATCAAGATCTGAAGTGCCAGTACTGTGATGCCACTTTTAAGAACACAACACTATTGCAGAGGCATCGTCCAGCTTGTAAATTAATCAGTCGTTTACATGAATGCCATAAATGCGTAGCATCTTTCGACACAGTTCAAGACTTGGAGAGGCACACAAAAGCGAGCCACAGTGCAATTGTGTTCCCATGCTTGcgatgcaataaagaatttaacCAGAAATCTGCTTTAGAAGAACACCATGAAAAGGTGCATACTGGAATACAAATGAAGAAGCGAAGAAAGATAATAGAATGTACTCTATGTGATATAACATTTAGAAACCTTAAAGAAATGATTGAACATGAAGAATTACACGAGCCAGGGGAAGAATACCCCTGCAAAGTATGCCCCAAATCCTACCAAAGTCTAAAAAAAGTCTATATGCACAAACAAAGGCATTATACCAAGAAAATCAATTGCCCAGACTGTAAAAAGCCCGTTATTAGCTCATATTACAACCAGCATAAGTTACGTTGCCCATTCTTAAAGGAAGACACCGGTGTTAACATTTGCGATGTCTGTGGAAAGGTTTTCTTAACACAAGCAAGTTTAAAAACGCACCAGCAAATCCATTCAAGCCCAATACCATGTGTTCATTGTGGGAGAAAGATCAAACCGGCATCTATGAAGCGCCATCTAGAAATGAGGCACTCAACTTATATTGCAGATGAGGAAATAAAATCTAGACGTGTGTTACTACACTGTGATGCATGTAGCTATGTGACGCGAAAGAGTAGCGACTTTGAGAACCATGTGAATAAAGTTCATTTGCAGATCAAGCCATACAGCTGCGCTGTATGTGGAAAACAGTTCTGTGGCAAGTCGAGGCTCGCTGAACATATGAGAACTCATTCCACGTCCCACGTTTGCTTTTGCCCAACGTGTAATAAGAAATTTGCTAACAAAGTCTGTCTCAAAATGCATCTTAGACGTCACACTAATGAAAATCCTTATGAATGCAATATATGTTCTGAAAAATTCCGTTCTTCAAGTATAATGAAGACTCATAGATTGAAAAAACACCAGGATAAGACTATAGCCTGTCCGTTGTGTGATGCAATGTACCATTTAGTAGCAGAAATGAGGTTCCATGTGAAAAAAACTCATTGGAAGCGTTCAGAACCCTTTGATTATAAGAAAATAGTTTCAGAGGAGTATTATCATTTGTTTCAAGATAGACGGCTGCAGAAACTTGGCGATGAAAATGGATTACAAACTGGTTTATCGTGA
- Protein Sequence
- MEESTKRSLLEQMSIEWLKQHLRTIFHSPQYCSLCFTTDGEFYSLDKMFAANEELSTRPLREVINYVFNFDVEEYMPSNNICEQCTEKTIQSYIFISNTKKSYKILKNCLNDLESKVEDISCTLDHQNDYENSNIMIVIEYDDETFNQLKELNAGCSTILTDKPIIKNKEITVEHMKKEFKEYNGPVIIPTARVEKYPRTNTAKKNIALQEKVPTPNVTLKEGKIVIEPLVTNEIPASPRFNTYCCTSCEDIFTTYRSLKEHEKAKHNTIIYKCRFCEKIYNTQQYLDFHYRSVHNKSRCRFCQNLFTVDKLNEHLKVMHGNNIYSCGQCELVYYSKEQLDTHSRATHGTLIDKNSKLCVMCLKNITETEVSSHKCKFSCLECHKSPCIHYNYLMSYREQILNHAAFIQCLDCDYTTKRKEHLITHVNREHLDHHPFTCDDCGTQFYTKLSLKTHILQFHQDLKCQYCDATFKNTTLLQRHRPACKLISRLHECHKCVASFDTVQDLERHTKASHSAIVFPCLRCNKEFNQKSALEEHHEKVHTGIQMKKRRKIIECTLCDITFRNLKEMIEHEELHEPGEEYPCKVCPKSYQSLKKVYMHKQRHYTKKINCPDCKKPVISSYYNQHKLRCPFLKEDTGVNICDVCGKVFLTQASLKTHQQIHSSPIPCVHCGRKIKPASMKRHLEMRHSTYIADEEIKSRRVLLHCDACSYVTRKSSDFENHVNKVHLQIKPYSCAVCGKQFCGKSRLAEHMRTHSTSHVCFCPTCNKKFANKVCLKMHLRRHTNENPYECNICSEKFRSSSIMKTHRLKKHQDKTIACPLCDAMYHLVAEMRFHVKKTHWKRSEPFDYKKIVSEEYYHLFQDRRLQKLGDENGLQTGLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00706288;
- 90% Identity
- -
- 80% Identity
- -