Ecen023531.2
Basic Information
- Insect
- Eupithecia centaureata
- Gene Symbol
- Rfx2
- Assembly
- GCA_944548335.1
- Location
- CALYMU010001224.1:1620453-1645503[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.15 1.2e+03 1.0 0.0 3 16 198 211 197 216 0.86 2 3 1.9e-37 1.5e-33 116.0 0.0 3 78 232 307 230 308 0.97 3 3 3 2.4e+04 -3.2 0.0 25 36 725 736 723 740 0.77
Sequence Information
- Coding Sequence
- ATGTCTGAGATGGGCTTTGAAAATGTGTTCTACTTGGAGAATTTTGAGTGCGCCGGCGACGAGGTGCTGGTGGAGTCTTCGCCGCCCGCCTCTCCCGACATGGCGGCTCGGTTGGCGGCGCCCGCGCAGAGTGGCGCGGGCGGTGCTTCGCCGAGTACAGTGCGCGAGCTCATTGTGATTCCCGAACTGCCGGAATCCATCCTGCAACACGCCATGCAGGTTTCCAGCACCGTGGTGGAAGTTAGCGGAGACGACTCCGGTCAGTCCAGCCCCAACGGAGAGCACCAACACGCGTTCATCACTGTCGCAAGTGAGGGAGGGAACGGCGTCAACTATCACGTGCAATATGTCACCGAGCCACAGGAGATATACACCCAGGGACATCAGATGGAAACTCTTCGTTCGTACCCCGTGTATGGCGTCGCGACGGTCGCCAATGGAGGCGGCGAGGCGGATGGGAACGCTTGGGGCGGGGCTTCGTCCGCGGATTATACGGCCTATGGCGTTGTGGTGGCAGGCGACGAGGCGGAAGCGCCCGCGTCCCCCGCCACCCCGGCCACGGGCGCGCCGCAGCCGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTGGACCACTACGAGACGGCGGAAGcgccCGCGTCCCCCGCCACCCCGGCCACGGGCGCGCCGCAGCCGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTGGACCACTACGAGACTGCGGAAGGCGTCTCTCTCCCTCGCTCAACCCTCTACGCCCACTACCTCCGTCACTGTTCCACCCACCACCTGGAGCCGGTGAACGCAGCGTCCTTCGGCAAGCTCATTCGGTCCGTGTTCGTGGGTCTCCGGACGCGGCGGCTCGGGACCCGCGGGAACTCCAAGTACCACTACTACGGGATCAGAGCCAAGCCTAGCTTGGACCAGCCGCCCGATGCTAGTGATAGTGCAGATGACAGCGCACAGCTTAGTGATAAACAGGAGTCAACGGGCAGCCGCCGCAACTCTGTCGGCTCGAACGGCGCGCGGTCGCCGCTCGGCGCCGCATCGGCGTTACATCGGCAGTACCTAGCCTGCGTGTCGGCGCCCGAGCCGCCGCCCATGGACCTGCCTTGCGGGGACCTGCCGCCGCAAGCCTTGCAGCTGCTGAGGAAACATCACCGCGAGCATGGATCCATGTTTCTGGAAGCAGTAGCGGCCCTAGACACCGGCGGCGTGGAGGCGGCCCGGCGCGCCTTCTGGCGACGTTGTGCCGCCAACGAGCCGCTAGACCGGCGCGCGCTCGCCAAGCTATGTGCCAGGAAGGACGTATGCGCCTGGCTGCGCACAGCAGATACGGCGCTCTACCAACGCGCCGTCGACATGTTACTGCCGGATGTGCTGCGGCCTATCCCGCCGCAACTCACACAGGCTATCCGCAACTTCGCGAAGTCAGTGGAGAGCTCTGTATCGGCGGGCTCGACCGCAGCCCCGGCGGGAGGCGCCCGCgcggccgcccgcgccgccgccgcgctcgccGGAGCGCTGCGCCGCTACACCTCGCTCAACCACCTCGCGCAGGCCGCGCGCGCCGTGCTCTCCAACCAGCATCAGATACACCAGcgcccgcgccccgccgcgctcgCCGGAGCGCTGCGCCGCTACACCTCGCTCAACCACCTCGCGCAGGCCGCGCGCGCCGTGCTCTCCAACCAGCATCAGATACACCAGcgcccgcgccccgccgcgctcgCCGGAGCGCTGCGCCGCTACACCTCGCTCAACCACCTCGCGCAGGCCGCGCGCGCCGTGCTCTCCAACCAGCATCAGATACACCAGATGGTGTCCGACTTGAACCGCGTGGACTTCCGCGTggtgcgcgagcaggcgggctgGGCCTGCGCCTGCCCCTCGCCCGCCGTCGCCAACAAACTGGAGCAGGACTTCAAGGCGACCCTGAGCCGCGGCGCCACGCTCGAGCAGTGGGCGGCCTGGCTGGAGCGCTGCGTGGAGGGAGCCCTCGGGTCCAACAACAACAGCGCAGGCGGCTCCGGCGCACGCGGGGACTTCGTGCCGCGCGCTCGGCGGCTGCTGCTAGACTGGTCCTTCTACTCCTCGCTCGTCATACGCGAGCTCACTCTCAGATCTGCCGCATCGTTCGGTTCGTTCCACCTGCTCCGCCTGCTGTATGACGAGTATGTGTCGTACCTGGTGGAGCGGCGCGTGGCCGAGCACCGCGCCGAGCCTCCCATCGCCGTGATGCACCCGCCCATGGACGAAGAGATAGAAGAGAACGAAGAGGTACTCGAAGAGGCTCGTCCTCTCGAGGACGACCGTCCTCTCGACGACGAGCCGGACTGGGACTGGGAAGACGAAGACGAAGAGGACGAACCCGAAGCCAAGAGGGCTAAGAACGATTAG
- Protein Sequence
- MSEMGFENVFYLENFECAGDEVLVESSPPASPDMAARLAAPAQSGAGGASPSTVRELIVIPELPESILQHAMQVSSTVVEVSGDDSGQSSPNGEHQHAFITVASEGGNGVNYHVQYVTEPQEIYTQGHQMETLRSYPVYGVATVANGGGEADGNAWGGASSADYTAYGVVVAGDEAEAPASPATPATGAPQPPRMPPATVQWLLDHYETAEAPASPATPATGAPQPPRMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCSTHHLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPSLDQPPDASDSADDSAQLSDKQESTGSRRNSVGSNGARSPLGAASALHRQYLACVSAPEPPPMDLPCGDLPPQALQLLRKHHREHGSMFLEAVAALDTGGVEAARRAFWRRCAANEPLDRRALAKLCARKDVCAWLRTADTALYQRAVDMLLPDVLRPIPPQLTQAIRNFAKSVESSVSAGSTAAPAGGARAAARAAAALAGALRRYTSLNHLAQAARAVLSNQHQIHQRPRPAALAGALRRYTSLNHLAQAARAVLSNQHQIHQRPRPAALAGALRRYTSLNHLAQAARAVLSNQHQIHQMVSDLNRVDFRVVREQAGWACACPSPAVANKLEQDFKATLSRGATLEQWAAWLERCVEGALGSNNNSAGGSGARGDFVPRARRLLLDWSFYSSLVIRELTLRSAASFGSFHLLRLLYDEYVSYLVERRVAEHRAEPPIAVMHPPMDEEIEENEEVLEEARPLEDDRPLDDEPDWDWEDEDEEDEPEAKRAKND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00698914; iTF_00703671; iTF_00696241; iTF_00698006; iTF_00699835;
- 90% Identity
- -
- 80% Identity
- -