Eabb005469.1
Basic Information
- Insect
- Eupithecia abbreviata
- Gene Symbol
- -
- Assembly
- GCA_943735975.1
- Location
- CALSER010000031.1:1473767-1477570[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0038 27 5.2 0.0 25 40 43 58 33 67 0.83 2 9 0.0019 13 6.2 0.0 21 46 220 245 206 250 0.80 3 9 0.061 4.3e+02 1.4 0.2 23 45 306 328 301 336 0.87 4 9 0.43 3e+03 -1.4 0.1 21 30 332 341 328 354 0.85 5 9 0.00094 6.7 7.2 0.1 21 46 420 445 412 451 0.85 6 9 0.017 1.2e+02 3.2 0.0 21 46 448 473 444 479 0.84 7 9 0.003 21 5.5 0.0 20 45 475 500 468 511 0.87 8 9 0.56 4e+03 -1.7 0.0 22 34 505 517 501 532 0.69 9 9 0.00036 2.5 8.5 0.1 21 45 532 556 515 563 0.89
Sequence Information
- Coding Sequence
- ATGTCTGTTTGCAGAATATGTTTACATGGCAATGTTTCACTGAAACCCATTCTCAACTCACAACTACAAGAATTGTTTGAATTTCTTTCAACCAACAAGTTGCAGACAGAAGATCGAAGACCAGAATCAGTATGCTACATTTGCTACGCTCTGCTGAGCAGAAGCCATAAGTTAATGATTACCTCCCGAAAGGCCGAACTAATACTTACTAACCTCTGCTGTAATAGGTTGCCGGTCAGTCCAGCAGCAGTAAAATTTCTAAATGAAGGCCCAATTCCCCTCATCACTGCAGGGTATACCTTACAACCTGTTACAATCCACCAATACCCTGATGATAGCAATGATGAGGAAAACTGTCATATCAAATGTGAGCCAGATGATGATGATAGCAATGATGCTGATTTGTTCCCTGAGGAAGTAAAAAATGACGTTGACAAAGACCCCACTACTGTGATTAAAGATGAACATACAAGTACTCACGAAGAAAACCAAATTTTCATAGAACCTTACAATGTTAAACAAGAGACAACCAACCCAACCCTTAAAAAGATCAAGACAAAAGCCCTTGTGAGAAGACAACGGCCATATCTGTGCGGCGCTTGCGGAAAATCTTTCACAGAGAAAGGCGACTTTAAGAAACACATGAGAATCCATTCTGGAGAAAAACCATTTACTTGCAGTATATGTCTGAAACAGTTTAACGAAAACTATAAATTAAAATCTCATATGAGCATCCATGACGGAAAGAAGTTTATTTGTAAATTGTGTGACAAACCCTTTCCTGAAAGGTATCAATTGAAACGACATGTCAGCAGAATGCATGCAAGCAATAAGAGATATGCCTGTGAATATTGTGATAAGAAATTTCATGAAAACAACCAACTGCTGACTCATATAAAAAATCACACGGGACATAAACCTTATTGCTGTGACGTATGTAATAAAACCTTCAAGGAAAAACGCAGTTTAATTGTACATCTCAGAAATCACACCGGAGAAAGGCCATACAGCTGCAAAATTTGCGAGAAAAGATTTGTCTCTGGCACAATATTAAAAAATCACAATCTAACACACACAGATGGGAAGCTCTTCGCTTGTCATCGTTGTAAGAAAACTTTTACCGTTCTAAGCTATTTAAAAAGTCATTTACAAAAACATACAGAGAGAAGAAAAGAAGGATCTGCCTGCGCTTGCGACCGGTGCGGGAAAACATTTTTCGACACGAGTGTTTTAAAAAAACACATGAAAATTCACACCGGCGAAAGGCCCTATGCTTGCGACTTGTGCCATAAAACTTTCATTGAAAAGAGTAACTTAAAACGACATATCCGAACGCACACGGAAGAGAAGCCTTTTAATTGTGATCTGTGTGACAAGTCATTTGCTGATAGCGGCAACTTGAAGACTCATAGACGGGTTCACACTGGAGAAAAACCTTTTTCTTGCGACGCCTGTGGAAAAGGTTTCGCGCAGTCGACCTCATTGAAGAAACATTTAACAACGCACACTGGCGAACGTCAATTTTCGTGTCCTTTGTGCAACAAAGCTTTCTCAGCAAAGAACAGCGTGAAGATACATATGAGAATTCATAGTGGTGAAAAGCCATACACTTGCAATGTGTGTAGTAAATCTTTCCATGAGAGTAGCTCGTTAAGTAGGCATATGAGAACACATGGGGGAGAAACCCCGTATTTGTGTCTAATGTGTGACAAATCGTTTAGTAGGAAATCTTATTTGCAGCACCATATTGCGTTTTGCAAACGTAAGTGA
- Protein Sequence
- MSVCRICLHGNVSLKPILNSQLQELFEFLSTNKLQTEDRRPESVCYICYALLSRSHKLMITSRKAELILTNLCCNRLPVSPAAVKFLNEGPIPLITAGYTLQPVTIHQYPDDSNDEENCHIKCEPDDDDSNDADLFPEEVKNDVDKDPTTVIKDEHTSTHEENQIFIEPYNVKQETTNPTLKKIKTKALVRRQRPYLCGACGKSFTEKGDFKKHMRIHSGEKPFTCSICLKQFNENYKLKSHMSIHDGKKFICKLCDKPFPERYQLKRHVSRMHASNKRYACEYCDKKFHENNQLLTHIKNHTGHKPYCCDVCNKTFKEKRSLIVHLRNHTGERPYSCKICEKRFVSGTILKNHNLTHTDGKLFACHRCKKTFTVLSYLKSHLQKHTERRKEGSACACDRCGKTFFDTSVLKKHMKIHTGERPYACDLCHKTFIEKSNLKRHIRTHTEEKPFNCDLCDKSFADSGNLKTHRRVHTGEKPFSCDACGKGFAQSTSLKKHLTTHTGERQFSCPLCNKAFSAKNSVKIHMRIHSGEKPYTCNVCSKSFHESSSLSRHMRTHGGETPYLCLMCDKSFSRKSYLQHHIAFCKRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00696645;
- 90% Identity
- iTF_00696645;
- 80% Identity
- iTF_00696645;