Eabb011208.1
Basic Information
- Insect
- Eupithecia abbreviata
- Gene Symbol
- -
- Assembly
- GCA_943735975.1
- Location
- CALSER010000089.1:666670-668589[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-09 6.3e-06 26.0 0.0 2 41 17 55 16 57 0.90 2 2 3.8 3.4e+03 -1.9 0.0 17 22 132 137 129 145 0.60
Sequence Information
- Coding Sequence
- ATGTCGGGAACTCGAAGTAGGAGCAAAGAAGTGAAAGTAAAATGGAGCCAAGAAGATTTAAATAGAGCATTTAAACTTGTGGAAAAGGGAACTACAATAAGAGAGGCAGCTCGCTCTAATGGCATCCCGTTTTCAACTCTCCAAGAGAGACTAAAAAAGAAGAACTCAGAGTTTCCAGAAATGGGAAGAAAACCAGTCTTCACAAAAGAACAAGAAGCGGAAATGGCAGACCAGGTAAAATTCCTTGGGAACATATTTTATGGATGCACTTTAATACAGATAAGAAAGATGGCGTATGAATTCGCAGTTAAAAACAACGTAAAGCATGACTTTAATGAAAGTCTTGGAATGGCGGGAAAAGACTGGCTTAAAGGATTTATGAAAAGAAATAAATTATCTGTTCGAAAAGCTGAAGGCACGAGTCTGAATAGAGCTACAGCTTTTAACAGGAAGGAAGTCGACATATTTTTCAAGTTGCTTGAAGAATTAATGGAGAAATATAAGTTTCTTCCAAGAAACATATGGAATGTAGATGAAACGGGCATCTCCTCGGTGCAAGACCCAGGAAAAATTGTTACTGAAAAAGGCCAAAAACGCGTTGGTTCTATAACCTCCGGCGAAAGAGGGAAGACAGTTACAGCTGTGTGTGCAGTCAATGCTACTGGCGGTTACCTTCCGCCAATGTTGATTTATCCTCGTCTGAGACATTCTCCAGCGTTGGAAAGCGATGGTCCACGTGGGGCTATTTACCGATGCTCGAAGAATGGATGGATCAACGAAGACCTATTTGTAGATTGGCTGAAGCATTTCGCAGATTTTACAAAACCAACTGAAAACGAACCAATATTGCTGATTTTGGACAATCATAGCAGTCACATCTCTTTAAGAGGTTATGAGTTTTGCAAAAAGAGTAACATTGTAATGCTGTCACTGCCACCACACGGCTCCCATAGAATCCAGCCTTTAGATGTTTCCATCTATGGTCCATTCAAAGCTGCGTACAAGCAAGAATGCAACATCTTTATGAAAACTGAATTAGGACGAAAGATCACACAAAACGACATTGCCTCGCTGTTCAAAAAAGCATTTCAAAAGGTAGCGACTATCCCAAAAGCTGAAGCAGGATTTGCTTCCACAGGAATATATCCTTTGAACCCAGACGTGTTCACAGACGCAGATTTTGTGGCTGCTGAAATTTTAAACAGCAGTGAATTAGTAGTGTCAGAAGAAGAACGGCGCGAACAAGACAACAAAACTCCTGAAGCTCAAATCATAATATTTAGCACAGAGCCTAGCGATCCACACAAATCAGCCCCTACTTCACCATCACTTCTCACCGATCATATCCAAACAGAACCAGCAAATAGTGCTGTGGCGTCATCCCAAGTCCTACAACCGATAAAAGACAACGCCGTTCCCTCAACTTCAGCGGTCACTGCTAAAGAACTGCTACCAGTTCCAAAAAAACCCACAAATAAAAAGAAAGTCCAGAGAGCCACACGAAAACAGCATGCAACAGTCCTAACAAACACTCCAAACAAGGAAGCTCTGATAAAAAAAGAAGAGAGAAGAGCGACAAGAGAAAATAAAAAAGAAACTGGTGCTAAAACAAAAACAGGAATAAAGACGGCGAAGAAAAGACCAGCTAAATATAATAATGTACGAAAGGCGAAAAAGAGAGTTCTCCAAGACAAAAATAAGGATGAGATGTCATCAGAGTCTGAAATCGAAATGGTTGACGTACGCGATGACGATGACGACACCGATGTTGAAGATCTGGAGAATAAATGCTTGTTATGTGACGATTACGGCAGGAACAACGAACTTTGGTACAGGTGCGTACAGTGTGGACTATGGGCTCACGCAGAGTGTTCGGGCTTAGAGTCCCCCGAAGGCTACACTTGCGATTTGTGCCGCTAA
- Protein Sequence
- MSGTRSRSKEVKVKWSQEDLNRAFKLVEKGTTIREAARSNGIPFSTLQERLKKKNSEFPEMGRKPVFTKEQEAEMADQVKFLGNIFYGCTLIQIRKMAYEFAVKNNVKHDFNESLGMAGKDWLKGFMKRNKLSVRKAEGTSLNRATAFNRKEVDIFFKLLEELMEKYKFLPRNIWNVDETGISSVQDPGKIVTEKGQKRVGSITSGERGKTVTAVCAVNATGGYLPPMLIYPRLRHSPALESDGPRGAIYRCSKNGWINEDLFVDWLKHFADFTKPTENEPILLILDNHSSHISLRGYEFCKKSNIVMLSLPPHGSHRIQPLDVSIYGPFKAAYKQECNIFMKTELGRKITQNDIASLFKKAFQKVATIPKAEAGFASTGIYPLNPDVFTDADFVAAEILNSSELVVSEEERREQDNKTPEAQIIIFSTEPSDPHKSAPTSPSLLTDHIQTEPANSAVASSQVLQPIKDNAVPSTSAVTAKELLPVPKKPTNKKKVQRATRKQHATVLTNTPNKEALIKKEERRATRENKKETGAKTKTGIKTAKKRPAKYNNVRKAKKRVLQDKNKDEMSSESEIEMVDVRDDDDDTDVEDLENKCLLCDDYGRNNELWYRCVQCGLWAHAECSGLESPEGYTCDLCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00700040;
- 90% Identity
- iTF_00704917; iTF_00704918; iTF_00704919; iTF_00696415;
- 80% Identity
- -