Eabb008087.1
Basic Information
- Insect
- Eupithecia abbreviata
- Gene Symbol
- -
- Assembly
- GCA_943735975.1
- Location
- CALSER010000061.1:541602-543904[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.4e-09 6.6e-06 26.0 0.0 2 41 68 106 67 108 0.90 2 2 4 3.5e+03 -2.0 0.0 17 22 183 188 180 196 0.60
Sequence Information
- Coding Sequence
- ATGCACACCCACACATTGATAGAGGGTGGCGTGAGTGTACCCCGCGCCGACGCACCCGCCCCCGCTCAGTTCCGAGCAGGCGTCAGGGAGAAAAGCACGTGTGTTTGTTTCGCGCCATTTTGTTGTAACTTTTTAGCCGCGGAACATAAGAGGATGTCGGGAACTCGAAATAGGAGCAAAGAAGTGAAAGTAAAATGGAGCCAAGAAGATTTAAATAGAGCATTTAAACTTGTGGAAAAGGGAACTACAATAAGAGAGGCAGCTCGCTCTAATGGCATCCCGTTTTCAACTCTCCAAGAGAGACTAAAAAAGAAGAACTCAGAGTTTCCAGAAATGGGAAGAAAACCAGTCTTCACAAAAGAACAAGAAGCGGAAATGGCAGACCAGGTAAAATTCCTTGGGAACATATTTTATGGATGCACTTTAATACAGATAAGAAAGATGGCGTATGAATTCGCAGTTAAAAACAACGTAAAGCATGACTTTAATGAAAGTCTTGGAATGGCGGGAAAAGACTGGCTTAAAGGATTTATGAAAAGAAATAAATTATCTGTTCGAAAAGCTGAAGGCACGAGTCTGAATAGAGCTACAGCTTTTAACAGGAAGGAAGTCGACATATTTTTCAAGTTGCTTGAAGAATTAATGGAGAAATATAAGTTTCTTCCAAGAAACATATGGAATGTAGATGAAACGGGCATCTCCTCGGTGCAAGACCCAGGAAAAATTGTTACTGAAAAAGGCCAAAAACGCGTTGGTTCTATAACCTCCGGCGAAAGAGGGAAGACAGTTACAGCTGTGTGTGCAGTCAATGCTACTGGCGGTTACCTTCCGCCAATGTTGATTTATCCTCGTCTGAGACATTCTCCAGCGTTGGAAAGCGATGGTCCACGTGGGGCTATTTACCGATGCTCGAAGAATGGATGGATCAACGAAGACCTATTTGTAGATTGGCTGAAGCATTTCGCAGATTTTACAAAACCAACTGAAAACGAACCAATATTGCTGATTTTGGACAATCATAGCAGTCACATCTCTTTAAGAGGTTATGAGTTTTGCAAAAAGAGTAACATTGTAATGCTGTCACTGCCACCACACGGCTCCCATAGAATCCAGCCTTTAGATGTTTCCATCTATGGTCCATTCAAAGCTGCGTACAAGCAGGAATGCAACATCTTTATGAAAACTGAATTAGGACGAAAGATCACACAAAACGACATTGCCTCGCTACGTGTTCACGACGCAGATTTTGTGGCTGCTGAAATTTTAAACAGCAGTGAATTAGTAGTGTCAGAAGAAGAACGGCGCGAACAAGACAACAAAACTCCTGAAGCTCAAATCATAATATTTAGCACAGAGCCTAGCGATCCACACAAATCAGCCCCTACTTCACCATCACTTCTCACCGATCATATCCAAACAGAACCAGCAAATAGTGCTGTGGCGTCATCCCAAGTCCTACAACCGATAAAAGACAACGCCGTTCCCTCAACTTCAGCGGTCACTGCTAAAGAACTGCTACCAGTTCCAAAAAAACCCACAAATAAAAAGAAAGTCCAGAGAGCCACACGAAAACAGCATGCAACAGTCCTAACAAACACTCCAAACAAGGAAGCTCTGATAAAAAAAGAAGAGAGAAGAGCGACAAGAGAAAATAAAAAAGAAACTGGTGCTAAAACAAAAACAGGAATAAAGACGGCGAAGAAAAGACCAGCTAAATATAATAATGTACGAAAGGCGAAAAAGAGAGTTCTCCAAGACAAAAATAAGGATGAGATGTCATCAGAGTCTGAAATCGAAATGGTTGACGTACGCGATGACGATGACGACACCGATGTTGAAGATCTGGAGAATAAATGCTTGTTATGTGACGATTACGGCAGGAACAACGAACTTTGGTACAGGTGCGTACAGTGTGGACTATGGGCTCACGCAGAGTGTTCGGGCTTAGAGTCCCCCGAAGGCTACACTTGCGATTTGTGCCGCTAA
- Protein Sequence
- MHTHTLIEGGVSVPRADAPAPAQFRAGVREKSTCVCFAPFCCNFLAAEHKRMSGTRNRSKEVKVKWSQEDLNRAFKLVEKGTTIREAARSNGIPFSTLQERLKKKNSEFPEMGRKPVFTKEQEAEMADQVKFLGNIFYGCTLIQIRKMAYEFAVKNNVKHDFNESLGMAGKDWLKGFMKRNKLSVRKAEGTSLNRATAFNRKEVDIFFKLLEELMEKYKFLPRNIWNVDETGISSVQDPGKIVTEKGQKRVGSITSGERGKTVTAVCAVNATGGYLPPMLIYPRLRHSPALESDGPRGAIYRCSKNGWINEDLFVDWLKHFADFTKPTENEPILLILDNHSSHISLRGYEFCKKSNIVMLSLPPHGSHRIQPLDVSIYGPFKAAYKQECNIFMKTELGRKITQNDIASLRVHDADFVAAEILNSSELVVSEEERREQDNKTPEAQIIIFSTEPSDPHKSAPTSPSLLTDHIQTEPANSAVASSQVLQPIKDNAVPSTSAVTAKELLPVPKKPTNKKKVQRATRKQHATVLTNTPNKEALIKKEERRATRENKKETGAKTKTGIKTAKKRPAKYNNVRKAKKRVLQDKNKDEMSSESEIEMVDVRDDDDDTDVEDLENKCLLCDDYGRNNELWYRCVQCGLWAHAECSGLESPEGYTCDLCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00700040;
- 90% Identity
- iTF_00696416;
- 80% Identity
- -