Basic Information

Insect: Euphydryas editha
Gene Symbol: PAXBP1
Assembly: GCA_036937285.1
Location: JAUPFZ010000004.1:4589858-4612063[+]

Transcription Factor Domain

TF Family: GCFC
Domain: GCFC domain
PFAM: PF07842
TF Group: Unclassified Structure
Description: This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.003 47 4.8 0.0 6 39 145 178 140 180 0.88

2 17 0.023 3.6e+02 1.9 0.1 17 40 180 203 177 210 0.88

3 17 0.21 3.3e+03 -1.3 0.0 140 166 239 264 237 273 0.59

4 17 0.0015 23 5.8 0.1 6 40 267 301 262 309 0.90

5 17 0.0004 6.2 7.7 0.0 6 60 323 377 319 386 0.80

6 17 0.00067 10 7.0 0.0 4 42 389 427 386 444 0.80

7 17 0.0012 19 6.1 0.0 6 40 437 471 432 496 0.89

8 17 0.00075 12 6.8 0.0 4 41 507 544 504 574 0.83

9 17 0.0012 18 6.2 0.1 4 40 577 613 575 621 0.88

10 17 0.53 8.2e+03 -2.5 0.2 140 163 649 671 647 679 0.65

11 17 0.0015 23 5.8 0.0 6 40 721 755 716 763 0.90

12 17 0.0015 23 5.8 0.0 6 40 773 807 769 817 0.90

13 17 0.15 2.3e+03 -0.7 0.1 140 168 849 876 847 889 0.55

14 17 0.0014 23 5.9 0.1 6 40 885 919 880 929 0.90

15 17 0.0015 23 5.8 0.0 6 40 991 1025 987 1034 0.90

16 17 0.00055 8.6 7.2 0.0 6 59 1047 1100 1043 1102 0.80

17 17 5.3e-17 8.3e-13 49.9 0.2 6 190 1095 1258 1091 1267 0.71

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.003	47	4.8	0.0	6	39	145	178	140	180	0.88
2	17	0.023	3.6e+02	1.9	0.1	17	40	180	203	177	210	0.88
3	17	0.21	3.3e+03	-1.3	0.0	140	166	239	264	237	273	0.59
4	17	0.0015	23	5.8	0.1	6	40	267	301	262	309	0.90
5	17	0.0004	6.2	7.7	0.0	6	60	323	377	319	386	0.80
6	17	0.00067	10	7.0	0.0	4	42	389	427	386	444	0.80
7	17	0.0012	19	6.1	0.0	6	40	437	471	432	496	0.89
8	17	0.00075	12	6.8	0.0	4	41	507	544	504	574	0.83
9	17	0.0012	18	6.2	0.1	4	40	577	613	575	621	0.88
10	17	0.53	8.2e+03	-2.5	0.2	140	163	649	671	647	679	0.65
11	17	0.0015	23	5.8	0.0	6	40	721	755	716	763	0.90
12	17	0.0015	23	5.8	0.0	6	40	773	807	769	817	0.90
13	17	0.15	2.3e+03	-0.7	0.1	140	168	849	876	847	889	0.55
14	17	0.0014	23	5.9	0.1	6	40	885	919	880	929	0.90
15	17	0.0015	23	5.8	0.0	6	40	991	1025	987	1034	0.90
16	17	0.00055	8.6	7.2	0.0	6	59	1047	1100	1043	1102	0.80
17	17	5.3e-17	8.3e-13	49.9	0.2	6	190	1095	1258	1091	1267	0.71

Sequence Information

Coding Sequence: ATGGCGATAGCGAAAATTATCCAAGCGACAACCTCCCCTAAACGAGGAAAACGACTGCCCTACCTTGCCCCAAGGTCGTTGGTATCAAGAGATCGGCAATCGGAGGCACTTaaaagAGAGGAAAGCTGGGACACGTGCAACTGGTATAATACAACATGGTATGTTATAGCGCGTCCCGGCGCAGCGAAGCCGGTGGACAGCGAGGAGAAGCGGCAGCGCACGGCGGAGCGCGAGGGGCGGAGGCGTGCGCGACGGCTGCGGCGCGAGGCGGCCGGCACGGCGCACGCGCACCGCGACGGAGACTCCAGCGACGACGACCTGCCGCCCGCGCTGCTGCACCACTGCGCGCAGGAGACCGAGGCGATCCGCTCGCTGTCGGCGCGCCTGTTCGCGGACGCGCTGGGCGCGTGGCGCTCGGTGCGCGGCGTGTGCGCGCGCGTGGCGCGGCTGCGGCGCCGCCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGGCGAGTGCtccacgcgcacacacacacacacacacacacacacacagcacATCACACGGCTGCGGCGCCGCCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGGCGAGTGCtccacgcgcacacacacacacacacacacacacacacacagcacATCACACGGCTGCGGCGCCGCCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGGCGAGTGCtccacgcgcacacacacacacacacacacacacacacacacacacacacacacacacacagcacATCACACGGCTGCGGCGCCGCCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGGCGAGTGCtccacgcgcacacacacacacacacacacacacacagcacATCACACGGCTGCGGCGCCGCCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGGCGAGTGCtccacgcgcacacacacacacacacacacagcacATCACACGGCTGCGGCGCCGCCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGGCGAGTGCtccacgcgcacacacacacacacacacacacacacacacacacacacagcacATCACACGGCTGCGGCGCCGCCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGGCGAGTGCtccacgcgcacacacacacacacacacacacacacacacacagcacATCACACGGCTGCGGCGCCGCCAGCCCGCCATCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGGCGAGTGCtccacgcgcacacacacacacacacacacacacacacagcacATCACACGGCTGCGGCGCCGCCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGGCGAGTGCtccacgcgcacacacacacacacacacacacacacagcacATCACACGGCTGCGGCGCCGCCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGGCGAGTGCtccacgcgcacacacacacacacacacagcacATCACACGGCTGCGGCGCCGCCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGGCGAGTGCtccacgcgcacacacacacacacacacacacacacacacacacacacagcacATCACACGGCTGCGGCGCCGCCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGGCGAGTGCtccacgcgcacacacacacacacacacacacacacacacacacacacacacacacagcacATCACACGGCTGCGGCGCCGCCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGGCGAGTGCtccacgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacagcacATCACACGGCTGCGGCGCCGCCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGGCGAGTGCtccacgcgcacacacacacacacacacacacacacacacacacacagcacATCACACGGCTGCGGCGCCGCCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGGCGAGTGCtccacgcgcacacacacacacacacacacacacacacacacacacacacacacacagcacATCACACGGCTGCGGCGCCGCCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTTCTGGCGCCCTACGTCCGACACCAGGCGAGTGCtccacgcgcacacacacacacacacacacacacacacacacacacacacacacacacacagcacATCACACGGCTGCGGCGCCGCCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGGCGAGTGCtccacgcgcacacacacacacacacacacacacacagcacATCACACGGCTGCGGCGCCGCCAGCCCGCGCTCTACGCCGACGCGTACGTCGCGCACTGCCTGCCGCGCCTGCTGGCGCCCTACGTCCGACACCAGttaaTATTGTGGAATCCATTAGCTGATGAAGACAACGAAGACTACGAGAAAATGGACTGGTACAAATGTCTGATGATGTACGGCGTGAAGTCGGAGGCCCTGTCGAGCGACTCGGACCAGTCGTCGGACGACGAGACGGAGCCCCCGGAAGTCACCGAGGACTCCGTCCGCGACGACCCCGACCTGATGCTAGTGCCGACTATCATTGAAAAGGTTGTGCTTCCTAAGGTTACTGAGCTGGTGGAGCAGGCGTGGGACCCGCTGAGCGTGCGCGCGTGCGTGCGGCTGCGGCGCGTGCTGCTGCGCGCGGCCGCGCTGCCGGGCGCCAGCGCGGCGCCGCGCCGACTGGCCGCCGCCGTGCGCGCGCGCCtcgccgccgcgctcgccgccgacGTCTTCCTGCCGGCGCTGCCGCCGCAGATAATGgagggcgcgggcggcgcgttCTGGAGGCGCAGCCTGGGCGGCGGCGTGCGCCTGCTGCGCGCCGTGCTGGCGCTGTGCGCGCCGCCCGCCGTGCTCCGCGCGGACTCGCTCGCGCTCGCGCTCATCGAGACGCTGAGctgcgcggcgggcgcggcgccggGCCCGCagacggcggcggcggcggcggcgctggCCGCCACGCTGCCGCGCTCGGGCGCGCTGCGCGCCGCTGCGCTGCGCCGcctcgccgcgctcgcgcagctGGCGCTCGCCCGCCTGCACTCCGACAACCCCATGCATCTGAAAGCCCTCGAGCAAGCAAGAGGCGTTCTAGCAGAAGCAAAAGCTGTAGAATGA
Protein Sequence: MAIAKIIQATTSPKRGKRLPYLAPRSLVSRDRQSEALKREESWDTCNWYNTTWYVIARPGAAKPVDSEEKRQRTAEREGRRRARRLRREAAGTAHAHRDGDSSDDDLPPALLHHCAQETEAIRSLSARLFADALGAWRSVRGVCARVARLRRRQPALYADAYVAHCLPRLLAPYVRHQPALYADAYVAHCLPRLLAPYVRHQASAPRAHTHTHTHTHSTSHGCGAASPRSTPTRTSRTACRACWRPTSDTRRVLHAHTHTHTHTHTQHITRLRRRQPALYADAYVAHCLPRLLAPYVRHQASAPRAHTHTHTHTHTHTHTHTQHITRLRRRQPALYADAYVAHCLPRLLAPYVRHQASAPRAHTHTHTHTQHITRLRRRQPALYADAYVAHCLPRLLAPYPALYADAYVAHCLPRLLAPYVRHQASAPRAHTHTHTQHITRLRRRQPALYADAYVAHCLPRLLAPYVRHQASAPRAHTHTHTHTHTHTQHITRLRRRQPALYADAYVAHCLPRLLAPYPALYADAYVAHCLPRLLAPYVRHQASAPRAHTHTHTHTHTQHITRLRRRQPAIYADAYVAHCLPRLLAPYPALYADAYVAHCLPRLLAPYVRHQASAPRAHTHTHTHTHSTSHGCGAASPRSTPTRTSRTACRACWRPTSDTRRVLHAHTHTHTHTHSTSHGCGAASPRSTPTRTSRTACRACWRPTSDTRRVLHAHTHTHTQHITRLRRRQPALYADAYVAHCLPRLLAPYVRHQASAPRAHTHTHTHTHTHTQHITRLRRRQPALYADAYVAHCLPRLLAPYVRHQASAPRAHTHTHTHTHTHTHTHSTSHGCGAASPRSTPTRTSRTACRACWRPTSDTRRVLHAHTHTHTHTHTHTHTHTHTQHITRLRRRQPALYADAYVAHCLPRLLAPYVRHQASAPRAHTHTHTHTHTHTAHHTAAAPPARALRRRVRRALPAAPAGALRPTPGECSTRTHTHTHTHTHTHTHTQHITRLRRRQPALYADAYVAHCLPRLLAPYVRHQASAPRAHTHTHTHTHTHTHTHTQHITRLRRRQPALYADAYVAHCLPRLLAPYVRHQASAPRAHTHTHTHTQHITRLRRRQPALYADAYVAHCLPRLLAPYVRHQLILWNPLADEDNEDYEKMDWYKCLMMYGVKSEALSSDSDQSSDDETEPPEVTEDSVRDDPDLMLVPTIIEKVVLPKVTELVEQAWDPLSVRACVRLRRVLLRAAALPGASAAPRRLAAAVRARLAAALAADVFLPALPPQIMEGAGGAFWRRSLGGGVRLLRAVLALCAPPAVLRADSLALALIETLSCAAGAAPGPQTAAAAAALAATLPRSGALRAAALRRLAALAQLALARLHSDNPMHLKALEQARGVLAEAKAVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -