Basic Information

Gene Symbol
nfxl1
Assembly
GCA_951509635.1
Location
OX608074.1:44769977-44771449[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 3 5.4e+04 -7.0 6.4 15 19 169 173 168 173 0.82
2 9 0.07 1.3e+03 1.1 0.3 4 10 204 210 203 211 0.95
3 9 2.8e-08 0.00051 21.5 12.8 1 18 218 234 218 235 0.98
4 9 0.73 1.3e+04 -2.1 1.1 5 10 260 265 260 265 0.93
5 9 7.6e-07 0.014 17.0 13.2 1 19 271 290 271 290 0.93
6 9 0.91 1.7e+04 -2.5 1.8 6 10 315 319 314 319 0.89
7 9 1e-09 1.9e-05 26.1 14.4 1 19 325 343 325 343 0.99
8 9 0.18 3.2e+03 -0.2 0.5 5 10 367 372 367 373 0.94
9 9 1.5e-07 0.0027 19.2 9.5 1 15 378 392 378 393 0.98

Sequence Information

Coding Sequence
ATGGCTTCTAACATTTCCAAagcaaacaaaccaaaaaatgttCCTTCCagcacaaataataaaaaaccagAAAACTCCAATAAATCTCAACAACAATCGAAAAAATTCAAAGatatccaaaataaaaacatggaaATGGctaaaaaaattacagaaaacTATGAGTCCAGTTCTGATGAAGAAGAACTCGATGGTGGAAAAATCTTGGaaaaattatacaaaaactaTACTGGTGGTAATGATCAACTGCAAAAGACTGCAGCTTTTCTGGAAAATGTTTTGCAATCAGGATCTGCAATATGCCTAATTTGCATTGGTTCGGTGAAGAGAATGGATGCAATTTGGTCTTGCAAGTTTTGCTATTGTGTGTTCCATTTGAATTGCGTAAAGCGATGGGCAAACGATAGTATTGCATTGCTTAAAGACAAGGGCACCGAAGAGCAAGGATATTACAATAATTTGGGTGAATTCATTCCGAAGAAAGTAAAAGCTGTGAAGTGGTGTTGTCCACAATGTCGACGGGATTATCAACCCCAAGATAGGCCAACTCAATATGAGTGCTTTTGTGGGAAAGAAGTCAATCCTGTGAATCAGGATTGGATAGTTCCACATTCTTGTGGGGAGACTTGTGGCAAACCATTACAACCTGAATGCGGTCATATGTGTATGCTTCTGTGCCATCCTggtCCATGTCCTCCCTGTGCTCAGAGCATATTTTCAAGTTGCAAATGTGGAAAATCCCCTCCGAAAACACTTCGTTGCTTCCAAAAAACCTGGACATGCGATCGGAAATGTCTGCAGGTTCTTCCTTGTGGCAAACACAAATGTGATCAAGTTTGTCATTCGGCTAAACAATGTCCCCCTTGCAGCAAATCTAGTCGTCAGAAATGCGTTTGCGGCAATGAAGAAGCCATGAAAAACTGTTCCCAGAGAATCTGGCAATGTAAGAAggtttgcaacaaaaaatatagttgtgGTATTCACAGTTGTAAACAAGTTTGTCATGATGGACCATGCGGCGATTGTCCACTTAGCCTTCCAAGATCTTGTCCATGTGGAAAAACTAGGAAAACAGCACCTTGCAACGAACCCATCGATACTTGTGAAGACACTTGTTACAAGTTACTCTCGTGTGGAAAACACTATTGCACCCAACGTTGTCATAAAGGCGATTGCAGCTTGGTAAgctatatttatttgttttaa
Protein Sequence
MASNISKANKPKNVPSSTNNKKPENSNKSQQQSKKFKDIQNKNMEMAKKITENYESSSDEEELDGGKILEKLYKNYTGGNDQLQKTAAFLENVLQSGSAICLICIGSVKRMDAIWSCKFCYCVFHLNCVKRWANDSIALLKDKGTEEQGYYNNLGEFIPKKVKAVKWCCPQCRRDYQPQDRPTQYECFCGKEVNPVNQDWIVPHSCGETCGKPLQPECGHMCMLLCHPGPCPPCAQSIFSSCKCGKSPPKTLRCFQKTWTCDRKCLQVLPCGKHKCDQVCHSAKQCPPCSKSSRQKCVCGNEEAMKNCSQRIWQCKKVCNKKYSCGIHSCKQVCHDGPCGDCPLSLPRSCPCGKTRKTAPCNEPIDTCEDTCYKLLSCGKHYCTQRCHKGDCSLVSYIYLF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00666188;
90% Identity
iTF_00666188;
80% Identity
-