Basic Information

Gene Symbol
nfxl1
Assembly
GCA_026256485.1
Location
JAGTYB010000014.1:1967207-1968795[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 3 3.2e+04 -7.0 6.4 15 19 174 178 173 178 0.82
2 9 0.1 1.1e+03 0.6 0.8 4 10 209 215 208 215 0.95
3 9 1.5e-08 0.00017 22.4 14.8 1 18 223 239 223 240 0.98
4 9 0.73 7.9e+03 -2.2 1.1 5 10 265 270 265 270 0.93
5 9 1.3e-06 0.014 16.2 12.9 1 19 276 295 276 295 0.93
6 9 0.92 9.8e+03 -2.5 1.8 6 10 320 324 319 324 0.89
7 9 1.6e-09 1.7e-05 25.5 12.7 1 19 330 348 330 348 0.99
8 9 0.18 1.9e+03 -0.2 0.5 5 10 372 377 372 378 0.94
9 9 4.7e-08 0.00051 20.8 8.0 1 15 383 397 383 399 0.97

Sequence Information

Coding Sequence
ATGGCTTCTCACATATCCAAAGTAAATAAACCAAAAAATGCACCTCCTAGCACAACCAACAACAACAACACCAACAAAAAACCAGAAAACTCCAATAATAAATCGCAACAATCGAAAAAATTTAAAGAAATTCAAAATAAAAATATGGAAATGGCCAAAAAAATAACAGAAAACTATGAATCTAGTTCGGATGAAGAAGAACTTGATGGTGGTAAAATTTTGGAAAAATTATACAAAAACTATACGGGCGGAAATGATCAACTCCAAAAGACAGCAGCTTTTCTAGAGAATGTCTTGCAATCGGGTTCTGCAATATGCCTCATTTGCATTGGCTCGGTGAAAAGAGCTGATGCTGTTTGGTCTTGCAAGTTCTGCTATTGTGTGTTCCATTTGAATTGTGTCAAAAGATGGGCTAATGATAGTATTGCATTGCTCAAAGACAAGGGCACTGAAGAACAAGGTTATTACAATAATTTGGGTGAATTCATTCCGAAGAAAGTCAAAGCTGTTAAATGGTGTTGTCCACAATGTCGACGAGACTATCAACCGCAAGATAGACCAACTCAATATGAGTGCTTTTGTGGGAAAGAAGTTAATCCTGTTAGTCAGGAATGGATAGTACCGCATTCGTGTGGTGAGACTTGCGAGAAGCCGCTACAACCCGAATGTGGTCACAAATGTTTGCTACTATGTCATCCAGGTCCATGTCCTCCTTGTGCCCAGAGCATATTTTCAAGCTGCAAGTGTGGTAAATCTCCACAGAAGACACTTCGTTGCTTCCAAAAGACTTGGACTTGCGATAGGAAATGCTTGCAAGTTCTTCCCTGCGGCAAGCACAAATGTGATCAGATTTGTCATTCGGCTAAACAATGTCCGCCTTGTAGCAAGACTGGTCTTCAGAAGTGTGTTTGTGGCAATGAAGAGGCGATGAAAAACTGTTCACAGAGAGTGTGGCAGTGTAAAAAGGTCTGCAATAAGAAATATAGTTGTGGTATACACAGTTGTAAGCGAGTTTGTCATGACGGAGAATGTGGCGATTGTCCGCTGGGCCTGCCAAGATCGTGTCCATGTGGGAAAACGAGAAAAATAGCACCTTGTAATGAACCCATTGATACTTGTGAAGACACTTGTTACAAGTTACTTTCATGTGGAAAACACTATTGCACACAACGTTGTCACAAAGGGGATTGCAGCTTGCTACCATCAGTTGTCTAG
Protein Sequence
MASHISKVNKPKNAPPSTTNNNNTNKKPENSNNKSQQSKKFKEIQNKNMEMAKKITENYESSSDEEELDGGKILEKLYKNYTGGNDQLQKTAAFLENVLQSGSAICLICIGSVKRADAVWSCKFCYCVFHLNCVKRWANDSIALLKDKGTEEQGYYNNLGEFIPKKVKAVKWCCPQCRRDYQPQDRPTQYECFCGKEVNPVSQEWIVPHSCGETCEKPLQPECGHKCLLLCHPGPCPPCAQSIFSSCKCGKSPQKTLRCFQKTWTCDRKCLQVLPCGKHKCDQICHSAKQCPPCSKTGLQKCVCGNEEAMKNCSQRVWQCKKVCNKKYSCGIHSCKRVCHDGECGDCPLGLPRSCPCGKTRKIAPCNEPIDTCEDTCYKLLSCGKHYCTQRCHKGDCSLLPSVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00695145;
90% Identity
iTF_00695145;
80% Identity
-