Euro024046.1
Basic Information
- Insect
- Eupelmus urozonus
- Gene Symbol
- -
- Assembly
- GCA_900480035.1
- Location
- UELX01001868.1:25737-28858[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00096 0.11 13.6 1.6 1 23 166 189 166 190 0.96 2 17 0.073 8.2 7.6 1.5 1 23 202 225 202 225 0.96 3 17 7.1 8.1e+02 1.4 4.4 1 22 231 252 231 252 0.90 4 17 0.0012 0.13 13.3 0.2 1 23 265 288 265 288 0.95 5 17 0.3 34 5.7 1.2 1 19 301 319 301 320 0.93 6 17 1.1e-06 0.00012 22.8 1.6 1 23 331 353 331 353 0.98 7 17 0.00056 0.063 14.3 0.0 1 23 359 381 359 381 0.96 8 17 0.00014 0.016 16.2 1.0 1 23 387 410 387 410 0.97 9 17 0.0033 0.37 11.9 5.1 1 23 545 568 545 568 0.97 10 17 0.0016 0.18 12.9 3.5 1 23 574 596 574 596 0.91 11 17 0.062 7 7.9 6.5 1 23 605 628 605 628 0.95 12 17 0.00075 0.085 13.9 3.1 1 23 634 656 634 656 0.96 13 17 5.8e-05 0.0065 17.4 1.2 1 23 661 684 661 684 0.96 14 17 0.022 2.5 9.3 1.6 1 23 690 712 690 712 0.98 15 17 0.0017 0.19 12.8 4.3 1 23 716 739 716 739 0.96 16 17 0.004 0.45 11.6 0.3 3 23 747 767 746 767 0.98 17 17 2.6e-05 0.0029 18.5 1.2 1 23 773 796 773 796 0.97
Sequence Information
- Coding Sequence
- ATGCAACATCGCGAGGTCGACTCCGCGACGTCGTCGGGGAAATCTCGCGACGCGCCGAGCGCAGTTATACCGCAGAGCTCCGACAGCACGGAGGCATCTTCATCGACGGATCTCACTTCAAAGATCAATCCCAGGGAACAGCCATCGTCATCCATCAATCCCGCCTCGTGTGACAAGGAATCAACCAGCAAGCCTGCAAATCAGAGTAAGTCACCCGTTATCAAAGAAGAACCCGAAGATCCCGAGACCCCGTCCACCCTTAGAAAGTACAACCTCCGCGATTCGACGAGCGTCGACGAGAACGGCTACAAGTCCTCCGACGAGGACAAAGAAGACCTGATCGGCAAACTGTCCGTCTATAAACAGCTGCCCGACGGTTCTTACTGCTGCGAgctctgcagcagcagcggcgccaACGACTCCAAGAAGACCATCGTCAAGCAAAAGGCCCTTATAATCCGTCACCTTTTGCGCGCCCATACTTACTGCTTTAGCTTCGAGTGCTCGAGCTGTCCCAGCACCTTCAAGCGCGAGGCCTGGCTGAAGAACCACACCGAGACGAGCCACCACGAAGAAAGCGCGTCCGGCCAGCAGCAGGAGTATTACGAGTGCGCGAGGTGTCAGCACAGGAGCACGAGCGAGAGCCTTTTGAGGCTGCACGCGCTCAGGAGGCACGCCGCTGTTTATAGGTACGTGTGCAAATGCTGCGCCAAGTGCTTCAAGAGCTGGCCTGCCAAGTACAAGCACGAGAAGACCATTGGCTGGAACGACAAGCCCAAGCCCAAGCCCAGATACGTCTGCGACAAGTGCAGCAGGATCCTCAGAACCAGGCCGGAGCTCGCCAAGCACCTGAAGGACGTTCATTCCGAGGACTTTTACAAGAATGGCGCGAGAGTTCTGCACAAGTGCAAGGAGTGCACGAAGCTGTTTTTGAGCCGCAAGTCCTTGGAGGAGCACGCGCCTGCCCATCAGGAGAACGACAGCACCGGCTACGCCTGCACCGACTGCGGCAAGCGACTCTCCAGTCGCGATCATCTGAAGAAGCACGCGCGGGTCCACAGCGGCGAGCGACCCTACGCCTGCCCGGAGTGCGGCCGCGCCTTCGCCCTGCGCACCACTATGAGGATCCACGCGCTCTCGCACAGCGGCATTAAGCCTTACGTGTGCCGGCATTGCGACCTGGGCTACTCGCAGAGGTCGGCTCTGATGATACACTGGAAGAGCAAGCACAAGGGCCAGCCGGCGCCGCCGCCCATCGAGATTCATCAGTACTTCGGTAGAGATGGCAGAGTTCTGGTGCCTTGTGAGATATACTCGTCACGTTGGTGCAGAAAACAAAGTATCATCTCCAGGATACGAGTAAGAACTGCTCTGGAGCTCATCGATACTAGTTCCGACAAAGACGAGGAGCCCACGAACATAACAATGTCCAAAAAACCAGTAATACCGCCTCTAAAGATAAAACGTTCGATAAAACATGCTACGGATGCAGCAGCCACCGAGACAAACGAGCCCGCACTCGAATCTCTACAGGAAAAAGGGAAACTCGACGAATCTCAAGAAGATTTTCCAGTGATCAAGCATGCATCCTCTCAAAGTTTGCTGTATAGAAAGCTCAAAGGTGGAGCCGGCTTCATCTGCAAAATCTGCCAGCAAAAGTTCAGTCACCGCTATAAGGCCAAGCAGCACGTAAAAACAAAGCACGGACCACGCCAGTCCTATACTTGTGCCGATTGtggtaaaatttacaaatccaAGTATCAGTTCGCCACGCACTGCAACCAGCATCGAGAAAATAGTAGCGACTATCTTTTCTGTTGCGACAAGTGCGACTACAGGGCCAAGTCGAAGCACTATCTTAAAACTCATGTTATACGTAAACATACTAACGAATATAATTTTGAGTGTGATCATTGCGGCAAGCGTTTTAAAATGAAGATGGATCTTAAGTTTCATCTAGGTACTCATGGAGTTTCGCAGCATATGTGCGATGCTTGTGGACGGATGTATACAAGTCAAGACTCGCTATACAAACATCGTCGGGTCGTGCACCTGAACGACTATAAGTTTCATTGTGAAATTTGCAATCAAAAGCTTCTCACTCAGGAAAATCTTGATCTTCACATGAAGTCACATAAGAATCTTCATAGCTGCGACGAGTGCGATCTCAAATTCACAAAAAGGTATTATGTCACAAGGCATAAGAAGCGAGTGCACAAAGTAGAGAAGAAGAATCTGTGCCCCGTTTGTGGAAAGGCTTTTGTGTGCATGGCTACCCTAAGGGTTCATTATTTAACCCACGCGAAAGTCAAGCCGTATATATGCAACGTTTGCGGATTCAGCTTTACGCAGCGTTCGTCGATGATGCTGCATTGGAAAAGAAAACATCCAGATGCTGAAGGGCCGCCTCCGCCTGTCATTCTTACAAACTTTTTCGATGCCATACAGTCCGAGGTTCACAAACTCGTCGAAACTACTACCGACGTTCCTAGCAGTCAGCCCAGTACCACCGCggtttaa
- Protein Sequence
- MQHREVDSATSSGKSRDAPSAVIPQSSDSTEASSSTDLTSKINPREQPSSSINPASCDKESTSKPANQSKSPVIKEEPEDPETPSTLRKYNLRDSTSVDENGYKSSDEDKEDLIGKLSVYKQLPDGSYCCELCSSSGANDSKKTIVKQKALIIRHLLRAHTYCFSFECSSCPSTFKREAWLKNHTETSHHEESASGQQQEYYECARCQHRSTSESLLRLHALRRHAAVYRYVCKCCAKCFKSWPAKYKHEKTIGWNDKPKPKPRYVCDKCSRILRTRPELAKHLKDVHSEDFYKNGARVLHKCKECTKLFLSRKSLEEHAPAHQENDSTGYACTDCGKRLSSRDHLKKHARVHSGERPYACPECGRAFALRTTMRIHALSHSGIKPYVCRHCDLGYSQRSALMIHWKSKHKGQPAPPPIEIHQYFGRDGRVLVPCEIYSSRWCRKQSIISRIRVRTALELIDTSSDKDEEPTNITMSKKPVIPPLKIKRSIKHATDAAATETNEPALESLQEKGKLDESQEDFPVIKHASSQSLLYRKLKGGAGFICKICQQKFSHRYKAKQHVKTKHGPRQSYTCADCGKIYKSKYQFATHCNQHRENSSDYLFCCDKCDYRAKSKHYLKTHVIRKHTNEYNFECDHCGKRFKMKMDLKFHLGTHGVSQHMCDACGRMYTSQDSLYKHRRVVHLNDYKFHCEICNQKLLTQENLDLHMKSHKNLHSCDECDLKFTKRYYVTRHKKRVHKVEKKNLCPVCGKAFVCMATLRVHYLTHAKVKPYICNVCGFSFTQRSSMMLHWKRKHPDAEGPPPPVILTNFFDAIQSEVHKLVETTTDVPSSQPSTTAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00691383; iTF_00690532;
- 90% Identity
- iTF_00690532; iTF_00691383;
- 80% Identity
- -