Euro005066.1
Basic Information
- Insect
- Eupelmus urozonus
- Gene Symbol
- GIP
- Assembly
- GCA_900480035.1
- Location
- UELX01010586.1:663-2467[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-10 2.9e-06 27.4 0.1 15 71 126 178 117 183 0.90 2 2 2.4 1e+04 -3.3 0.0 14 33 245 262 239 268 0.68
Sequence Information
- Coding Sequence
- AtggagagaaaagagatagTAAGAGGCATCggaaaattaaacaatgaagAGGTAAAGTGCAACATCTGTAAGATAAGCAAAGCGACTTGCTCATCGTTTAAAGGAATGCCATTTATAAGGTCGGAGACTATTCATGAAAGAGTCTACATGGATGTTTGGGAACTATCGCCAGTCAAATCAGTCGGTGGAgTTAAAACGAAAGGATACAGACTATGGTTATTAAAGTCGAAGCAGGTCATAGAATCCGTACACGTAAACATAGAAGAGAACAACGATGAAGAGTTTGAAGATGGAACcgataaaaatctacaaaatgaaaatgttgcGAGTCAAGGTGAACAGAATGATGATTCAGTAGCGGCAGATATGTCAAAATGGACGAGAGTCGAAAAACCAAGAAAGACAGAAGATAGAGTCGATGTGTATTATTATCCCCCTAATGATAACACCAGAATGAGGTCCATTAatgacgtaaaaaaatattttgaagaaaaatgtttaagttttgatcaagaaaaattttccttcaAACCTACGGGACCTATTGACAACGTAAAAGAATCTGACTCTAAGAAAAACGATGGAAATGTTTCAAGAGTAAATTTAGGGGAGATGGAAGTAGCTCATAAAGAAGAGGCTTTGATCGTGGAAGTTCCAAGGACATACGAAGAGAGTCAGCTGTCTCCCGAGAGAGATCACTGGAATGGAGCAATGTGCGAAGAGATACGTAATGAATTTGAGAGAAGTTTGGACACTCGTCGATTTACCTCCAGACAATTAGATGTTAAGTCGGCGTATTTGTAtgataaattacaagaaaaaaattacatgaaacAGCCTAAGGGCTTCGAAATTCCTGGAAAAGAGGATaaagtttgtttattgttaAGAGCAATTTATGGCTTACACCAAAGTGGTAAAGAGTGGTACAACGAGATTGAAAGTATTTTAGAGTCATTAGGCTTTGTTGAATTAAGTTGA
- Protein Sequence
- MERKEIVRGIGKLNNEEVKCNICKISKATCSSFKGMPFIRSETIHERVYMDVWELSPVKSVGGVKTKGYRLWLLKSKQVIESVHVNIEENNDEEFEDGTDKNLQNENVASQGEQNDDSVAADMSKWTRVEKPRKTEDRVDVYYYPPNDNTRMRSINDVKKYFEEKCLSFDQEKFSFKPTGPIDNVKESDSKKNDGNVSRVNLGEMEVAHKEEALIVEVPRTYEESQLSPERDHWNGAMCEEIRNEFERSLDTRRFTSRQLDVKSAYLYDKLQEKNYMKQPKGFEIPGKEDKVCLLLRAIYGLHQSGKEWYNEIESILESLGFVELS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -