Basic Information

Gene Symbol
JARID2
Assembly
GCA_900480035.1
Location
UELX01000803.1:6690-16544[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 9.7e-23 3.7e-19 69.5 0.0 6 89 1459 1540 1455 1540 0.94

Sequence Information

Coding Sequence
ATGGTTTTAAGCCGAAATGAcaagagaaaaaggaaagaagGAGACCTTGTGGATCTCATGGATCCGCTTGCAGAACCACAGAAAAGAACCAAAATACACGCACAAAGAAAGTTTGCTCAAGGAGCAGCTACTCCTGTGTTCAGTCCCGCGAGCACACCTATTAAAGAGAAGGAAAAACTAAAGCCTGCTGCATTCACTGAGCTGATAACGCACAAAAGACCAAACACAGAAGACTTTTTAACATTCCTTTGTTTTAGagGTACATCGATACTACCTCCAAGTCTGAATTTCTTCAGCGCAAGTTCCAAAAAGGACAAGCTGCAAGATGCCTCCAAATCATCTCCTCCTTCCGCCCTTTTTTCCAAAACAAATGGCACATGTGGTAAACCATTACCAcaatctaaaattgaaaatcatacGCCCACACCGGCTTCTCAAAAGACAACAGTGGTCAAAGAGAAGCCCGTCCCTGTTCCTAAGAAACAAGTCGCCGCGAGCATCCCTAAAACGATCAAGCTCAAAACGACCAGCACTGCCATTCAGGCCCTTAAGAAAAAGTATCAGGAGCAGAGGCTCGCTAAACAGCGTCTCAAAAAGTTCAAGCCTACCTCCATGAAAACGCGTTCATGCGCTTCCGTGGTCGAGCGAGCACCCGAGAAAATCGTGGTACCAAAGGTCGTTACCTCCAAGAAAATCGTACCACCGATAGAACGCAAGCGGCACGGACTGAGAAGCACTGGCATGTCCGAAAGCGAAAAGAAGAGTCTACCGCTCAAGAGCATTAAAAAACAACAGCTCGTAGCGAAACTAAAAAAGAAAGTCGCAAAAGAAGACACATCTAGCGTTGATTCATTCATTTTGAAGAGCACCGTCAAAAAGGTCGCGGCGAAGCCGACCGTGACGAGCAAACCGATACACAAGAAGCTCCTGAACAAGAGCAAGAAGATCCAGGCTAGACGGGTTACGCGATCACGCGCTGATGTTCCTAGGCCCAAGTCAGCATCTCCGGCCCCGACGAGAAGGCCTACGAGGAAGACGAAAGAGGCTGCAGCCGTGTATATGGAGATTTTGGGTAGGAAGCTGGTAAGCCCAGAACTGGAGAACGATGATAACATGTCGCTGGACAGTTTTCCGGAATTGCCAAACGCGAGGAAGATGGCACAAACGGAGAATGAGATTAAGGCGAAAGTTAAGTCGATGAAAGCCGCTGCGACTGTGAACGTTAATTCGGGGGTtaaagagaaggagaaagaaaaagagaaagaaaaggagaaggaaaaggagaaggagaaagagaaggagaaagagaaggagaaagaaaaagagaaagaaaagaagataaCAAACAGTgatagcaaCAGTAAAACAGCAAAAAGGAAAATCGCAAAGCCGGTCTTGCCATTGAAAAATAAGAGACTGGTAAAAGTCCAAAAGTATACTGAGCTGAACAGCGACGATGAATCGATCAGTTCTAAGGAGATGAACGAAATAATGAAAGTCCCTGTGACGAAGAGGCGATCAGCTCCGATAAGCACTCTCAAAACTAAGAAGCTGGATAACCGTAAACTTAGATCCAGTCGGAGTCTCGTATCTAGGAAAAGTCTTTCTAAATCTAATGACACTCCGCGTGTCGCCTCCAACGACTCAGCTAAATCAGCAAAGAATGCAGAGCCTCAAAGTACCGTTAAAACTGCTAAAGAAACTAGTAGCAAGGACACAGGCAAAGAGACGCCGAAGGAGAAGACGGCTCCCGTCAAGCGAAAACGTGACTCCAACGTCAACGACAAGGAAAAGGACAAAGAGAAAGATACGGCTAATTCTTCCAAACAAAAGTCAGAGGCAGCGAAGAACAAGAGTAAAACAACCGAGACCGAAATCGAATCCGAAGAAGAAACCTTGGGCACGCTTCTGCacaagatgaagaagaagaaggagagcgAGAAGGAAGAGGCCATCAGCGAGGCCGTAACCAAAAAGGTAGCAGAACCGAAACCTGCTAAACCTACAGCGACGGCACCGATAACGACGCCGAAACCGACGATCGTCGAGACACTAAAGACGCAAGCGGTCGTCGAGAGCACAACGAAGATCTCCGACGACGAGGAGTCCTTCCGCGGCTTCACCAAGAAGGCCATTACCAAAGCGACGTTGGCTTGTCAGCCCCCGGCGGTCATCAAGCCCGACGACATTGACAGCAAGGCGAACGTGCTTAAGCCTCACGACATTGTCCTAAAGGACACGAAGAAGCCAGACATCAAAAACTCGACGAGTCCGTTCCCTTGCATCAAGTCGATGCAGGATCAGCTGATGGGCAGCCACACGACCAGTACCGTGGCCAACGCCTCCGTTAAGCTCGAACCGGACTTCGGAGACATGAAGGTACCCGGCACTCCGACTCCGAGCTCGCTCAACATCTACGACATGCCGAAGGGCCTGACACCCTCGCACCGCAAGGAGCGCGTCAACATGTCCGCGGAGCAGATCGAGAAGTGGCTGAGCGAGAGCTCGCTCGCCAAGGAGGAGAGCAAAGTCGAGATGGAGTCCGTCTCCGGAGTCTTCAAGTACGACAGCAGTCCGTTCGTCGAGCcgaaaaaaagcgagccgcCTCCAGCTCCTCCAGTAACTCCCAGCCACGGTCATCTGTCTATATCACCGAGGATCCAGCACCTGGTGAGGCCGGTCAACGTGACGCTGTCCAAGCTGTCAGATAGGTTGAAGAAGGCTTCGATGGGAGTGGGTACTCCGAGGAGTATGCCCACCGCGCTGTTTCACCAGGTGAAGCCGCAGATGCCGATCGTCACTGCGAAGAAGCCGGTTATGACGCAGCCgtcgccgacgccgccgcctaGTGAGAAGAAGGAGGCGCCCAAGGAGACGAGCAGCGCGCTGCCGAGCAGGAAGATGAGCAAGGACTCGTCCTTTGGGGAGGATCATGCGGACAGCGACGTAGTGTCAAAGTCGGACGCTACCTCGGTGGGCGACTCGTCGGAAAAGAAGTCCCTGAACAGTCCCGAGAAGAAGGTTTTTTTTCACCAGCGAAAGCCCTTTCTGCCCAAGGTCAAGGAGCGCAAGCCCTCGAGCAGCGCGTCCGCCTTCTCGCCGGAGAACGAGAGCAGCGTTTACGCGTTCGAATCCGAGGCAGAGACGCCAGTGAGCACGCCCTTTCGCAGAAAGGCAAAAGAGCCCGTCAAATGCATCGAAACCAACGATAAGGATAAATCAGCGAGTACACAGTCGACGGCTAGTGAAGCGAAGAGTAAAAGTGGCGAGGAAACAACAAAAGTTACCGAGCCTTTAAACTCGCAAGAGGAAGCTCGGAAGGACGAAGAAAAATCGCCTCCGCTGTTGGAAAGAACAACGCCAAAGAACTTCGAGCTTCCGAAAAACTTCGCAGATTTAACAAATATACAGGTGTTACCACTAGACAAACTAACAACAAGCTGGAGTAATGTTAACTGCAGCGCTTCTATAGCCGTGCAGGTAAATCTGGACGACCagaagcagcaacagcagcaacagggCCAGCAACAATCAACGACAGCGGAGAGCAATGAGTCTAGTGCCGTGCAGAAGAGCACCGAGATATCCACGCAAACGGATGCTAATACGGACAATGACGACGACGACAGCGGCCAGCTATTTTACATTCCCCTGCAGGCGGTGACGCGCAACGGATCGGCCCAAGGCGGCCAGCAACTCATCCAGGGCGTAGCCGTGAAGCTGGGTACCGAGGGCCCCACTGGACCTAATCAGAGGGTGCTGCTTAAAGCTAAGCTTGTGACGAAACCGCCGATTTCGGTGGCGAGATGTCCGCCCATCGGCACCGTGCAGCCGACCGCCAGGACACCGCAGAACACCAGTGCGGATCAAGCGGATTTGCCGTCAACGTCGACGGTAGGGACGGGAGATGCAGGGTTCAAATTCCAGTTGCCTGCTGAGAAAGGGCCAAAAACGTCGACGATTCGTAAAACACCTGAGCGTAAAagtcctgaaaaaataatcaaaacaccGAAGAGTAGAGAAAGGAAGATGTCGGCTGATGGGGGCAAAGGAGGAAAGAGAGCTCAAACAAAAGCAAAGCCAATAGAAGTTCATTCaccaataaataaaactgcatTTCCAACTATGAAAAATCCTAATGATGAAGCTTGCCTTGTAGAAGCACCGACCTTTCGCCCATCAGAGAAAGACTTTCAGGACCCGTTGGAGTACATCGACAAAATACGACCGATTGCGGAAAAGTTCGGAATTTGCAAAGTAGTTCCTCCTTcaaattttaagccGGAATGTAAAGTTTCGGATGACATGCGATTTACAGCTTACAATCATTACGTTCACCGAATGCTTCATCGCTGGGGCCCCAACGTAAAAGAAATGATGgctataaagaaatatttagctACACAAAGCATAACTTTAACTCAACCACCATGGattggtGGTATGGAAGTTGATCTCCCACATTTGTATCAAACTGTACAAAATTTAGGTGGACTGAAAGAagttattgaaaagaaaaagtggCAAAAGGTAGCAGACGGCATGAAAATACCAAGATCCGCACAAGATCGAGTAACTAAATTGGATGATATTTACTGCAAATATTTACTTCCTTATGATACGTTATCGCAAGatgaaagagataaattatttaaagacgTGGAAGCTGAATGGAtaaagagggaaaaaagagaTAGGCAAGAAACACAGTCCACTGATAAtgaagatgatgatgacgaAGACAGTGCTGAAGAAATAGAAGAATGCattgtaaaaGGCCGCAATATGCCGTTGAACGCATTCTACCGGATCGCTCGTAACACTCAGCGCATGTGGTTCGGTGAACCGCAAAAACCAACAGCTGAAACAGAATGTGCCGCAGCGGAGGAGGTCGAAGCTGCCTTCTGGCGTCATGTCGTTGAGAAGAAACGTCATGTATGTGTGCATGCTGCGAGCATCGATTCCAGTGGTCGTGGCTTTGGCTTTTCTGTCGCTAAGAATAGTCCCTTCGGTCGGCACCCTTGGAACCTCAAAATTCTCACTAACAATGCCGGTTCAGTGCTCAGGGCTCTTGGTCCACAAATGGGTGTGACGGTACCAACGCTACACGTCGGTATGCTCTTTAGCGCCTGTTGCTGGTACCGCGACCCACATGGATTGCCTTGGATCGAATACCTGCACACAGGcgcaaaaaaaatttggtaCGGCATACCGAACGAACAAAGCAGTGCGTTCCGCAAGGCCCTAACCGAGATGTTCCCGCGTTACTGCAAGAACAAAACGATCTGGCTGCCCTCGGACACGGCTATGGTGCCACCTGACATGCTTGTAAGCAATGGTGTGCCACTCTGTCAAACCGTGCAAGAACCCGGTCAGTTTATCGTCGTTTTTCCTAAAGCTTTCACCTCGAGTATTTGCACGGGTTACGTCGTCTCCGAAAGCGTCTACTTCGCACAGCCTTCCTGGCTCGAGACAGCTGAACAAGTGTTCCAAgataTACACGATAGTTGTGAGcctacaatattttcatttcaaagacTGTTATTTAGCATTATCAATGATTCTAGATCTCATATTGATGTACTTAAACAGATTTTACCAACTGTCATCAAAGTTTGTGATGCAGAAATagaaaatcgcaaaaaattaaaagaattaggCCTCACGAATACTGAAAAATTACCGTTGCCAGACAGtgataaaaaaggaaaaggtaaaaaagtaaaagaggaTGAAGGAGATTACGAATGTGATACTTGCCGAGCAAACTTGTTTGTTTCTTTAGTAAGCAATCCTACAGATGAAAGCATCTTTTGCCTGACCCATGCCATACAATACatagagaagaaaaaacaagttttgaaaaattgcacGCTTATGTATACGTACAGTGagAGTGAATTAAACGATCTTATTCACAAACTAAAAGACAGGATTGAAGCCAAATCTAAAAAGACTAATCAAACAAAACAAGCTAAATAG
Protein Sequence
MVLSRNDKRKRKEGDLVDLMDPLAEPQKRTKIHAQRKFAQGAATPVFSPASTPIKEKEKLKPAAFTELITHKRPNTEDFLTFLCFRGTSILPPSLNFFSASSKKDKLQDASKSSPPSALFSKTNGTCGKPLPQSKIENHTPTPASQKTTVVKEKPVPVPKKQVAASIPKTIKLKTTSTAIQALKKKYQEQRLAKQRLKKFKPTSMKTRSCASVVERAPEKIVVPKVVTSKKIVPPIERKRHGLRSTGMSESEKKSLPLKSIKKQQLVAKLKKKVAKEDTSSVDSFILKSTVKKVAAKPTVTSKPIHKKLLNKSKKIQARRVTRSRADVPRPKSASPAPTRRPTRKTKEAAAVYMEILGRKLVSPELENDDNMSLDSFPELPNARKMAQTENEIKAKVKSMKAAATVNVNSGVKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKEKKITNSDSNSKTAKRKIAKPVLPLKNKRLVKVQKYTELNSDDESISSKEMNEIMKVPVTKRRSAPISTLKTKKLDNRKLRSSRSLVSRKSLSKSNDTPRVASNDSAKSAKNAEPQSTVKTAKETSSKDTGKETPKEKTAPVKRKRDSNVNDKEKDKEKDTANSSKQKSEAAKNKSKTTETEIESEEETLGTLLHKMKKKKESEKEEAISEAVTKKVAEPKPAKPTATAPITTPKPTIVETLKTQAVVESTTKISDDEESFRGFTKKAITKATLACQPPAVIKPDDIDSKANVLKPHDIVLKDTKKPDIKNSTSPFPCIKSMQDQLMGSHTTSTVANASVKLEPDFGDMKVPGTPTPSSLNIYDMPKGLTPSHRKERVNMSAEQIEKWLSESSLAKEESKVEMESVSGVFKYDSSPFVEPKKSEPPPAPPVTPSHGHLSISPRIQHLVRPVNVTLSKLSDRLKKASMGVGTPRSMPTALFHQVKPQMPIVTAKKPVMTQPSPTPPPSEKKEAPKETSSALPSRKMSKDSSFGEDHADSDVVSKSDATSVGDSSEKKSLNSPEKKVFFHQRKPFLPKVKERKPSSSASAFSPENESSVYAFESEAETPVSTPFRRKAKEPVKCIETNDKDKSASTQSTASEAKSKSGEETTKVTEPLNSQEEARKDEEKSPPLLERTTPKNFELPKNFADLTNIQVLPLDKLTTSWSNVNCSASIAVQVNLDDQKQQQQQQGQQQSTTAESNESSAVQKSTEISTQTDANTDNDDDDSGQLFYIPLQAVTRNGSAQGGQQLIQGVAVKLGTEGPTGPNQRVLLKAKLVTKPPISVARCPPIGTVQPTARTPQNTSADQADLPSTSTVGTGDAGFKFQLPAEKGPKTSTIRKTPERKSPEKIIKTPKSRERKMSADGGKGGKRAQTKAKPIEVHSPINKTAFPTMKNPNDEACLVEAPTFRPSEKDFQDPLEYIDKIRPIAEKFGICKVVPPSNFKPECKVSDDMRFTAYNHYVHRMLHRWGPNVKEMMAIKKYLATQSITLTQPPWIGGMEVDLPHLYQTVQNLGGLKEVIEKKKWQKVADGMKIPRSAQDRVTKLDDIYCKYLLPYDTLSQDERDKLFKDVEAEWIKREKRDRQETQSTDNEDDDDEDSAEEIEECIVKGRNMPLNAFYRIARNTQRMWFGEPQKPTAETECAAAEEVEAAFWRHVVEKKRHVCVHAASIDSSGRGFGFSVAKNSPFGRHPWNLKILTNNAGSVLRALGPQMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPNEQSSAFRKALTEMFPRYCKNKTIWLPSDTAMVPPDMLVSNGVPLCQTVQEPGQFIVVFPKAFTSSICTGYVVSESVYFAQPSWLETAEQVFQDIHDSCEPTIFSFQRLLFSIINDSRSHIDVLKQILPTVIKVCDAEIENRKKLKELGLTNTEKLPLPDSDKKGKGKKVKEDEGDYECDTCRANLFVSLVSNPTDESIFCLTHAIQYIEKKKQVLKNCTLMYTYSESELNDLIHKLKDRIEAKSKKTNQTKQAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
iTF_00690880;
80% Identity
-